PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107269.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Nin-like

Protein Properties

Length: 1042aa MW: 114901 Da PI: 5.6519

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107269.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	631	681	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_010107269.1 631 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 681 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	620	701	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	634	681	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.32E-23	943	1033	No hit	No description
PROSITE profile	PS51745	25.592	947	1029	IPR000270	PB1 domain
SMART	SM00666	9.3E-26	947	1029	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-26	947	1028	No hit	No description
CDD	cd06407	3.21E-37	948	1028	No hit	No description
Pfam	PF00564	1.3E-19	948	1028	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence Send to blast
MSESDEENTA TRAFPAKSKE AVNVREVLMD FDLDLDNPWP MDPIAFISNN PMSPLVFSSG 60 DLPCSPLWAF CDADNEEKLA RHVNSAIADS SRLLSSCEFS PLIRFSSMEI PLILKLLISL 120 ILKLLIRFRC VWIELPRNSN TAAERQAENE GNKPVPSPFL GLLPVDNPDG YYLLKERMTQ 180 ALRYLKESTD QHVLAQIWAP VKSGCRYVLT TSGQPFVLDP DSNGLHQYRM ASVMYMFSVD 240 GANGVLGLPG RVFRQKLPEW TPNVQYYSIR EYPRLDHAQH YNVRGSLALP VFEPSGQSCI 300 GVLELIMTSE KINYAPEVDK VCKALEAVNL RSAEILDHTS PQICNEGRQN ALTEILEILT 360 AACETHKLPM AQTWVPCMHR NVLAYGGGLK KSCTSIDGSC MGRVCMSTTD VAFYIVDAHM 420 WGFREACLEH HLQKGQGVAG RAFLSRNSCF CGDITQFCKN DYPLVHYARM FELTSCFAIC 480 LQSSHTGNDN YVLEFFLPPT ITNPSEQQAL LGSLFATMKK HFQSLKVASG YGLEEEGFVE 540 VIKVSEMEGH VSTLERIQVA QSAESPPRPS ALANGGEMAQ RDLSKQQLTA DSSAANGVHD 600 AVLDGGNMNQ VPNPENRDTK KPSERKRGKT EKSISLEVLQ QYFAGSLKDA AKSLGVCPTT 660 MKRICRQHGI SRWPSRKINK VNRSLTKLKR VIESVQGAEG AFGLTPLATS PLPVPVTSVS 720 RPSISNGTNQ HNSPNHQTCD PPMERKESPS TSSPRREGQV GMEDQWQRVG ILGQKELIHE 780 NGGYFFPEVN NNKGSNQSKS ASGSREASVG TPTSHGSCQG SPANGTVMAK DPFISSIHEQ 840 CVKVDGSPES ALQPTGELQF PVAQSIPDAL VAVESEELFR GMLIEDAGSS KDLRNLCPAA 900 ADAILDEPVP DQYCWINPPC SELAPKQTTG IIAQTTPNVK VGQEMRSVTI KATYREDIIR 960 FRIPTSSSIV ELKDEVAKRL KLEVGTFDIK YMDDDQEWVL IACDADLQEC MDICRSSGCN 1020 MIRLLIHDIM PNLGSSCEST DE

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence Send to blast

MSESDEENTA TRAFPAKSKE AVNVREVLMD FDLDLDNPWP MDPIAFISNN PMSPLVFSSG  60
DLPCSPLWAF CDADNEEKLA RHVNSAIADS SRLLSSCEFS PLIRFSSMEI PLILKLLISL  120
ILKLLIRFRC VWIELPRNSN TAAERQAENE GNKPVPSPFL GLLPVDNPDG YYLLKERMTQ  180
ALRYLKESTD QHVLAQIWAP VKSGCRYVLT TSGQPFVLDP DSNGLHQYRM ASVMYMFSVD  240
GANGVLGLPG RVFRQKLPEW TPNVQYYSIR EYPRLDHAQH YNVRGSLALP VFEPSGQSCI  300
GVLELIMTSE KINYAPEVDK VCKALEAVNL RSAEILDHTS PQICNEGRQN ALTEILEILT  360
AACETHKLPM AQTWVPCMHR NVLAYGGGLK KSCTSIDGSC MGRVCMSTTD VAFYIVDAHM  420
WGFREACLEH HLQKGQGVAG RAFLSRNSCF CGDITQFCKN DYPLVHYARM FELTSCFAIC  480
LQSSHTGNDN YVLEFFLPPT ITNPSEQQAL LGSLFATMKK HFQSLKVASG YGLEEEGFVE  540
VIKVSEMEGH VSTLERIQVA QSAESPPRPS ALANGGEMAQ RDLSKQQLTA DSSAANGVHD  600
AVLDGGNMNQ VPNPENRDTK KPSERKRGKT EKSISLEVLQ QYFAGSLKDA AKSLGVCPTT  660
MKRICRQHGI SRWPSRKINK VNRSLTKLKR VIESVQGAEG AFGLTPLATS PLPVPVTSVS  720
RPSISNGTNQ HNSPNHQTCD PPMERKESPS TSSPRREGQV GMEDQWQRVG ILGQKELIHE  780
NGGYFFPEVN NNKGSNQSKS ASGSREASVG TPTSHGSCQG SPANGTVMAK DPFISSIHEQ  840
CVKVDGSPES ALQPTGELQF PVAQSIPDAL VAVESEELFR GMLIEDAGSS KDLRNLCPAA  900
ADAILDEPVP DQYCWINPPC SELAPKQTTG IIAQTTPNVK VGQEMRSVTI KATYREDIIR  960
FRIPTSSSIV ELKDEVAKRL KLEVGTFDIK YMDDDQEWVL IACDADLQEC MDICRSSGCN  1020
MIRLLIHDIM PNLGSSCEST DE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107269.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028564.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	W9SKU2	0.0	W9SKU2_9ROSA; Protein NLP7
STRING	XP_010107269.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Entrez Gene	21391221

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]