PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089251.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 385aa    MW: 43103.1 Da    PI: 7.6314
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089251.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17161195135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010089251.1 161 CSHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 195
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-18155205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-14159193IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.424159191IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14159218No hitNo description
CDDcd002022.21E-14160207No hitNo description
PfamPF003201.3E-15161195IPR000679Zinc finger, GATA-type
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
PfamPF041852.5E-8319374IPR007312Phosphoesterase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDMYGLSAQD CFRIDDLLDF SNDDLFSSIS HSSDAADLHH HNHLPPLPPT ASSSSTAPTD  60
FTNDLCVPPS DDAADLEWLS RFVDDSFSDI PTGENYIAGS TAIFPNDASF SVRARSKRSR  120
APAAGAASWT APTETMSPIA VGKSKPKGDS SPSTEGGVRR CSHCASEKTP QWRTGPMGPK  180
TLCNACGVRY KSGRLVPEYR PAASPTFVLT QHSNSHRKVL ELRRQKEIQQ QEQQQQEERQ  240
QPRENQPQQQ QEQFYPHHHG FRIDFLIVLG RMMITWAAFD RVDRFAQMYL LRKRVLAWKI  300
LIRSVGIWGT LPAAFDSKGT PCPTQPNTLS VYSITSHGST SHVKKQLAQG YPQKTIFDSV  360
HENGFDFGIY FQNIPTTSDS ERRWV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032949.10.0GATA transcription factor 4
SwissprotO497431e-73GATA4_ARATH; GATA transcription factor 4
TrEMBLW9QHK00.0W9QHK0_9ROSA; GATA transcription factor 2
STRINGXP_010089251.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-53GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]