PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904744.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family HSF
Protein Properties Length: 517aa    MW: 53124.6 Da    PI: 5.0196
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904744.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.47.1e-31151017102
                     HHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind   7 yeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                     y++++d++++ ++sw  +g sfvv+ + ef++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i+r+k
  XP_013904744.1  15 YDLVDDPSTDPVVSWGPDGASFVVWTPPEFSRDLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANDNFIRGRRDLLKDIHRRK 100
                     99**********************************************************999.........*********************98 PP

                     X CS
    HSF_DNA-bind 102 s 102
                      
  XP_013904744.1 101 P 101
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000567.3E-161033IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-331599IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-281599IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.3E-501599IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-311599IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-164860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLIVPLALWC RALRYDLVDD PSTDPVVSWG PDGASFVVWT PPEFSRDLLP RHFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANDNFIRGRR DLLKDIHRRK PTGPGGGGGG GAAGGSSSAH  120
VPAGQGAIEL GHYGGLGDEI DSLKRDKNVL MLELVRLRQA QQASDSRMRD LQQRLDATES  180
RQNTIINFLG RVAHNPAVLQ QLVAAAQQSG MQRIGSSPGR AAGRGARKKR RARGAGGSGG  240
DESDEPVAGP AATSENQIIQ YQPQGDFTEE LLRGMAAVVQ QPGGGGGGAA FGDFADAFAD  300
LQLQQVPGTA VPQTVTIQEQ PVIFDAGSFP ILGLDGTVTF QPTAASPAIP PSPPLAGSPM  360
PDGAPAPLPF VPAAAPGVPG VAGFPAATGA AAAPIPLGMQ AMGAGTTTLA PGIPLFPAAP  420
LPPASAPMAV DAAPRVETPP DDDGGVELPA DLISSLQTLG SADLMMDDLH KDELWETLFG  480
GGSFPGSSGG LAGGGAAATA QQGQGGKQGG KQPAAGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A6e-22159915110Heat shock factor protein 1
5hdn_A6e-22159915110Heat shock factor protein 1
5hdn_B6e-22159915110Heat shock factor protein 1
5hdn_C6e-22159915110Heat shock factor protein 1
5hdn_D6e-22159915110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232RKKRRAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904744.10.0Heat shock factor protein HSF8
TrEMBLA0A0D2MT450.0A0A0D2MT45_9CHLO; Heat shock factor protein HSF8
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-63heat shock factor 1
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]