PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013897050.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family CPP
Protein Properties Length: 763aa    MW: 75435.5 Da    PI: 8.0429
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013897050.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.71.3e-14394430340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++C+Ckk++Clk+YC+Cfaag++Cs  C C dC+N+e
  XP_013897050.1 394 ARSCSCKKTRCLKLYCDCFAAGAMCSG-CACLDCRNNE 430
                     689************************.********97 PP
2TCR49.48.8e-16464502240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +++gC CkkskCl++YCeCf++g+ C+ +CkC +C+N +
  XP_013897050.1 464 HRRGCACKKSKCLRMYCECFQHGVPCGGSCKCVSCQNGT 502
                     789**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-12392432IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.214393503IPR005172CRC domain
PfamPF036383.1E-11395430IPR005172CRC domain
SMARTSM011141.4E-13463504IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-12466500IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MLSPTRTPDR ARRGGLHLAM IDASMDALLC SPTGSMGGAA GFLGSPLPQI PLFQPSPRRA  60
GLGPETGLGP GFAAAADSPA RPAPSMSGLS SLFASPLPPG AAGGGRAAAA AYEAAALQFA  120
AELLATPCSK RADTGGPAPG SLLGAPAPYP GSLQDPDLLE SFMASPPTRR APGVRAAAGV  180
PGGGRGPQGA ASLDALLDLV GAPPGVAAAA AAAVAGTGAG SGVGVSCRGV GAAGPMSPAP  240
CAVLSAGELD LLALLQTPGS EQQQQQQAQQ QQQQEQQQQP PVGVSAATLQ RLVASGLEVS  300
SYSPRARDAA GAEPSPFSPV PPAPAPAASR PSSVEAAASE RGGGGGGGGS AAADAQETPA  360
SRDVEARALA ATLPFFAPAP ATPAAPMPAM APEARSCSCK KTRCLKLYCD CFAAGAMCSG  420
CACLDCRNNE AWEAQVQDAR ARIMARDANA FAPKVNSDAG GPSHRRGCAC KKSKCLRMYC  480
ECFQHGVPCG GSCKCVSCQN GTDAAAEAAR ANHAGRRRGG ARPEASGSLG TPVDEQGGPH  540
LLSPPAAPPP GARPLPLGVA ALHLVSGGGG SSCGRSGSPA PSESGATGAT TAYGGCGGGA  600
GGGSPASVVK LPPPGGGGGA SASAVAGGAP RQGAARTLGL RTPLPLGALE AAPGPDGARP  660
QEGRGQEDQA FMNYFDPAAA AHQDDTHNSQ QQQQQQQQQQ EEPEQEGGQG LAASQQPDAQ  720
EPAAGTLGSL LRHSLPVTSC HRPRRCRGRR LPRGLPRRVP WCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-2039550012120Protein lin-54 homolog
5fd3_B9e-2039550012120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013897050.10.0Protein lin-54
TrEMBLA0A0D2MUD10.0A0A0D2MUD1_9CHLO; Protein lin-54
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-27TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]