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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013894691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | HB-other | ||||||||
Protein Properties | Length: 334aa MW: 34592.1 Da PI: 6.5314 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.2 | 5.8e-13 | 19 | 70 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + t+ q e+Le+ + n++p+ ++ + LA++++Lte+ V+ WF rR + +k XP_013894691.1 19 QKTPLQKEVLEASYMINQNPTPDHCRALAQRIQLTEKEVRDWFSGRRRRVRK 70 45899*******************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-14 | 4 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.86 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-13 | 14 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-10 | 16 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-15 | 19 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.1E-10 | 20 | 70 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDGDDGGAPT GKTPAKPRQK TPLQKEVLEA SYMINQNPTP DHCRALAQRI QLTEKEVRDW 60 FSGRRRRVRK KEQKAAEAAG GGGASPPPGA AASGAAAAYA GTPQPPSRQP STGAHGSGGG 120 GGAPASAAAA SPGAASGWQH HHQQQPWEAD PLAGLTADEE AQLLELARQQ LPQPLREDGP 180 PLALRFDPPP PGANVGPAPT AAAGKRRAEG QAGPDGKRSR GGSVDGARTP VHESEGADWA 240 AAAAAGGERG WAARAEAEAR VAELEEQALQ LQQLLESCAD EAEAGRLRAE LAQRQVALEE 300 QRTLLAAPAP AADGAADRLA QQRAREVERQ RATQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 69 | RRRRVRK |
2 | 63 | 71 | RRRRVRKKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013894691.1 | 0.0 | hypothetical protein MNEG_12292 | ||||
TrEMBL | A0A0D2M2Z2 | 0.0 | A0A0D2M2Z2_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5105 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 4e-06 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Entrez Gene | 25729640 |
Publications ? help Back to Top | |||
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