PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00750.1.p
Common NameMIMGU_mgv1a002367mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 677aa    MW: 76929.8 Da    PI: 8.0391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.3e-2260143189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       ++Yn YA+e GFsvr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v +  leHnH+l
  Migut.I00750.1.p  60 NYYNCYATESGFSVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----RLRKETRTGCPAMMRMRLADSKRWRVLEATLEHNHTL 143
                       69****************************************99988.....99*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1960143IPR004330FAR1 DNA binding domain
PfamPF105513.0E-24255351IPR018289MULE transposase domain
PROSITE profilePS509669.631544580IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-4552576IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEETLDTEQT TDVVLSSSAG PPQTDGQNVI LEVDTSEASK KEFVAPAAGM EFESYEDAYN  60
YYNCYATESG FSVRVKNSWF KRNSREKYGA VLCCSSQGFK RVKDVNRLRK ETRTGCPAMM  120
RMRLADSKRW RVLEATLEHN HTLGAVKKIG SGPHRKMLFK SEPETPPVKL YRALVVDGGT  180
PSDFNQTLAK SSSETLNQLN LKKGDTQAMY NYLCRMQLTN PNFVYLMDLN EEGRLRNVYW  240
VDARARAANA YFGDVIFLDS ACLSNKYEVP LISFVGINHH GHLILLGCGL LACESIQSYV  300
WLFKAWLSCK SGNRNPPQTI VTDRCKILQA AISDVFPKSN HRFSLSHIMK KVPEKLGGLR  360
NYDGIRKAIV KGVYEAVKPF DFEAAWAFMI QQFGIADNEW LRSLYEDRAK WAPVYLKDTF  420
FFGMAAARPG ETLNPFFEKY LHKQTPLKEF LDKYELALQK KHNEEANSDM ESRSSSIDLK  480
TRCSFEVQLS KVYTRGIFKR FQLEVEEMYS CFGTMQVHVD GAITIFLVKE RVLCEGNRRE  540
IRDFEVLYNR GAGEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL SRWTKDYKRL  600
CVEENGSGGG GGGGGGGGGD ITERGRWFEQ LYRSALQVVE EGVVSLDHYK VALQMFDESL  660
DRVHNIEQKN VPTHLL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00750.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856729.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A022Q1L80.0A0A022Q1L8_ERYGU; Uncharacterized protein
STRINGMigut.I00750.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]