PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00644.1.p

Common Name

LOC105962357, MIMGU_mgv1a000862mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Nin-like

Protein Properties

Length: 957aa MW: 105173 Da PI: 5.8401

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00644.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	587	638	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Migut.E00644.1.p 587 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 638 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	577	658	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-26	590	638	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-21	857	945	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-24	860	942	No hit	No description
SMART	SM00666	1.1E-22	860	943	IPR000270	PB1 domain
PROSITE profile	PS51745	24.237	860	943	IPR000270	PB1 domain
Pfam	PF00564	9.7E-17	860	942	IPR000270	PB1 domain
CDD	cd06407	1.92E-35	861	942	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MPSQPKQEPT PRPPAHPPYA AADVLMDLDL DLDGSWPLDQ IFAAAAAASP VQPFLLSNSE 60 QPCSPLWAFS DDNTNGNFVA GAAFRLSDSS RILTYANNPD METESAFVNN EKKKLPSPFM 120 GLMPIDSLDG SCMIKERMTQ ALRHFKDLTE HNILAQVWAP VKNGGRYMLT TSGQPFVLDP 180 NSSGLHQYRL ISLMYMFSVD GDADADLGLP GRVFRQKLPE WTPNVQYYSS KEFPRLNHAL 240 NYNVQGTLAL PVFEPSGQSC VGVVELIMTS QKINYAPEVD KVCKALEAVN LKSSEILDHQ 300 SPQICNQGRQ NALAEILEVI SVVCETHKLP LAQTWVPCRH RSVLANGGGF KKTCSSFDGS 360 CMGRVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAFASHNSC FCPDITEFCK 420 TEYPLVHYAR MFGLRSSFAI CLRSNHTGND EYVLEFFLPL NLESDEDQRN LLDSLLVTMK 480 QHFGSLSVAS GKDLDHEWRS IEVIKASTAD EKLNLVPDTS PPRLSSSLPN GETLHLDAFE 540 KVVMSEFNAT NVKRNGSVGG GPTEVQNATV VEAKEVGKKT ERKRGKAEKT ISLEVLQQYF 600 AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLTKLKRVIE SVQGGEGTFS 660 LTSLGTNSIP VAVGSISWAA NNLNGPLEFH EDKKDVAIIS NSPPVADEQV DPTNHNIREG 720 SKSRSGSREE ESTGTPTSQG SCQGSPSVRN ERGGPHEPPP VCHQTGEINL SSAFLIPNNN 780 NNNYITTAAP PPPPDEPFGG MLLEDAGSSH DLRNLCPAGE PLFDEYSWTR QPCTDTLPVK 840 DFPVDQHRMP RFSARPEAKT ITIKATYRED IIRFRLPIDS GIVKLNDEVA KRLKLEMGTF 900 DIKYLDDDHE WVLIACDADL QECMDVSRSS GASNIIRLLV HDIMANLGSS CESSGD*

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MPSQPKQEPT PRPPAHPPYA AADVLMDLDL DLDGSWPLDQ IFAAAAAASP VQPFLLSNSE  60
QPCSPLWAFS DDNTNGNFVA GAAFRLSDSS RILTYANNPD METESAFVNN EKKKLPSPFM  120
GLMPIDSLDG SCMIKERMTQ ALRHFKDLTE HNILAQVWAP VKNGGRYMLT TSGQPFVLDP  180
NSSGLHQYRL ISLMYMFSVD GDADADLGLP GRVFRQKLPE WTPNVQYYSS KEFPRLNHAL  240
NYNVQGTLAL PVFEPSGQSC VGVVELIMTS QKINYAPEVD KVCKALEAVN LKSSEILDHQ  300
SPQICNQGRQ NALAEILEVI SVVCETHKLP LAQTWVPCRH RSVLANGGGF KKTCSSFDGS  360
CMGRVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAFASHNSC FCPDITEFCK  420
TEYPLVHYAR MFGLRSSFAI CLRSNHTGND EYVLEFFLPL NLESDEDQRN LLDSLLVTMK  480
QHFGSLSVAS GKDLDHEWRS IEVIKASTAD EKLNLVPDTS PPRLSSSLPN GETLHLDAFE  540
KVVMSEFNAT NVKRNGSVGG GPTEVQNATV VEAKEVGKKT ERKRGKAEKT ISLEVLQQYF  600
AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLTKLKRVIE SVQGGEGTFS  660
LTSLGTNSIP VAVGSISWAA NNLNGPLEFH EDKKDVAIIS NSPPVADEQV DPTNHNIREG  720
SKSRSGSREE ESTGTPTSQG SCQGSPSVRN ERGGPHEPPP VCHQTGEINL SSAFLIPNNN  780
NNNYITTAAP PPPPDEPFGG MLLEDAGSSH DLRNLCPAGE PLFDEYSWTR QPCTDTLPVK  840
DFPVDQHRMP RFSARPEAKT ITIKATYRED IIRFRLPIDS GIVKLNDEVA KRLKLEMGTF  900
DIKYLDDDHE WVLIACDADL QECMDVSRSS GASNIIRLLV HDIMANLGSS CESSGD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00644.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842109.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A022R1N3	0.0	A0A022R1N3_ERYGU; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Migut.E00644.1.p
Entrez Gene	105962357

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]