PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01307.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 413aa    MW: 46288.6 Da    PI: 6.4317
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01307.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11101124427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       e C+f++++G Ck+G +CkF+H+p
  Migut.D01307.1.p 101 EDCSFYMKFGSCKFGQSCKFNHPP 124
                       89********************97 PP
2zf-CCCH39.11.3e-12188212327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtGtCkyG++C+F H++
  Migut.D01307.1.p 188 EKECLYYMRTGTCKYGSNCRFDHPE 212
                       689********************96 PP
3zf-CCCH29.71.1e-09322348127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f+++tG Ck+ ++CkF+H++
  Migut.D01307.1.p 322 PGEPECNFYLKTGDCKFKSNCKFHHPK 348
                       5799*********************96 PP
4zf-CCCH38.91.4e-12371395226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++lC f++r+G+CkyG+ C+F H+
  Migut.D01307.1.p 371 DQPLCTFYHRFGICKYGPACRFDHP 395
                       789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.29197125IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-497124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-697126IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9101124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389144172IPR000571Zinc finger, CCCH-type
SMARTSM003562.3146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4150171IPR000571Zinc finger, CCCH-type
PfamPF146080.27150170No hitNo description
PROSITE profilePS5010315.657185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6185212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7187213IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10188212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5191211IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155321349IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5326351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4327348IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6369396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826369397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6371397IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9371395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4374394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAVAVAVAVV GESVAIDEEV EFHNAIEREF YQLIIEQAEI ETGHEKSPAV DFGTVKIDDL  60
NEGKDGKYAE NVGSKIGEEV TELASCNRSW IINYPTRPDA EDCSFYMKFG SCKFGQSCKF  120
NHPPRRMNQG IKQREYHRDE NFERVGQGEC KYYLTPEGCK YGRDCNYSHG SQKTEEFNFL  180
GLPIRRGEKE CLYYMRTGTC KYGSNCRFDH PEPSAVVGAD SSSGYGNGGS LTSKLVSSSS  240
VSSWSSPREF NATSPFTSVT PPTKVVASSN REWEGYEAAT YPTSESGLPA PPAFAVENPP  300
INLSTPYHYQ QNMVVEEYPE RPGEPECNFY LKTGDCKFKS NCKFHHPKSR LSNAKPYSLP  360
VNNKGLPLRP DQPLCTFYHR FGICKYGPAC RFDHPLDFAS LQTNFRRQVY GN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01307.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833864.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like
SwissprotQ5RJC51e-103C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A022RIX80.0A0A022RIX8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-102C3H family protein