PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00326.1.p
Common NameLOC105975210, MIMGU_mgv1a013697mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 25074.8 Da    PI: 7.1282
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00326.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.7e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+snrqvt+skRrngi+KKA+E+SvLCda v+viif+s+gk++e++s
  Migut.A00326.1.p  9 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCS 59
                      79***********************************************96 PP
2K-box79.67.6e-2771166196
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y+k sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged+++L++keL+ Le++Le+++++ ++k++e+++++ ++  + e+e+q+ + +
  Migut.A00326.1.p  71 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRHLKGEDITTLNYKELMVLEEALENGISTLKAKQMEFVRMMRKHNEMIEEENQNLQFK 163
                       7899***********************************************************************************999999 PP

             K-box  94 Lrk 96 
                       Lr+
  Migut.A00326.1.p 164 LRQ 166
                       997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-36296IPR002100Transcription factor, MADS-box
CDDcd002651.90E-43280No hitNo description
PRINTSPR004041.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.5E-1683164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.384170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEISVLCD AHVSVIIFAS SGKMHEFCSP  60
STTLVDMLDQ YHKLSGKRLW DAKHEHLDNE INRIKKENDS MQIELRHLKG EDITTLNYKE  120
LMVLEEALEN GISTLKAKQM EFVRMMRKHN EMIEEENQNL QFKLRQLHLD PMDENVIEPH  180
GLYDHQGVPD YEAHQMPFAF RVQPMQPNLQ ERF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16160160MEF2 CHIMERA
6byy_B2e-16160160MEF2 CHIMERA
6byy_C2e-16160160MEF2 CHIMERA
6byy_D2e-16160160MEF2 CHIMERA
6bz1_A2e-16160160MEF2 CHIMERA
6bz1_B2e-16160160MEF2 CHIMERA
6bz1_C2e-16160160MEF2 CHIMERA
6bz1_D2e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00326.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855839.11e-159PREDICTED: floral homeotic protein GLOBOSA isoform X1
SwissprotQ033781e-141GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A022Q6361e-158A0A022Q636_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]