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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G087300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23345.6 Da PI: 4.5173 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g+Wv+eIr p++ r r++lg+f+tae+Aa+a +aa +l+g Manes.16G087300.1.p 25 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTAEKAARAFDAALYCLRG 75 79*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-12 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-30 | 25 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 26 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-21 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMFFKNTKTM AKQATPEQPS SSSDPKYKGV RKRKWGKWVS EIRLPNSRER IWLGSFDTAE 60 KAARAFDAAL YCLRGREAKF NFPDNPPDIP GGRSLNPQEI QVVASRYANE NSSSPSTTTT 120 MMESSSSSRQ VMESSSSDGA AQVDWSSILN ELDYNENAPE YGLYPGMDNE YYPPLPLPSV 180 LDHDRNVNDD DDQNGDDVYP LWNFSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 21 | 83 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 33 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G087300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598041.1 | 1e-153 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 1e-50 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2C9U9T6 | 1e-151 | A0A2C9U9T6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031623m | 1e-144 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 6e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G087300.1.p |
Publications ? help Back to Top | |||
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