PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G010200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CAMTA
Protein Properties Length: 992aa    MW: 111138 Da    PI: 5.8334
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G010200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.34.7e-56131283117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk+ e++ iL+n+ek+++t+e++++p+sgsl+L+n++++r+fr+DG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+e+n
  Manes.13G010200.1.p  13 QEaQTRWLKPAEVLYILQNHEKYKFTHEPPHKPTSGSLFLFNKRVLRFFRRDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHGEQN 102
                          5669************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p+fqrr+yw+L+ e+e+ivlvhy+ev
  Manes.13G010200.1.p 103 PNFQRRSYWMLDPEYEHIVLVHYREV 128
                          ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.5828134IPR005559CG-1 DNA-binding domain
SMARTSM010763.9E-7511129IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.6E-10416508IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.66E-19423507IPR014756Immunoglobulin E-set
CDDcd001023.38E-6423507No hitNo description
PfamPF018333.4E-10423506IPR002909IPT domain
Gene3DG3DSA:1.25.40.206.7E-14618714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.194620712IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-15623714IPR020683Ankyrin repeat-containing domain
CDDcd002043.30E-12640712No hitNo description
PfamPF127963.8E-7644713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.953653685IPR002110Ankyrin repeat
SMARTSM002480.0012653682IPR002110Ankyrin repeat
SMARTSM002483500692721IPR002110Ankyrin repeat
SMARTSM0001512770792IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151771800IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.12E-5775879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.7827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364828857IPR000048IQ motif, EF-hand binding site
PfamPF006120.022830848IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014850872IPR000048IQ motif, EF-hand binding site
PfamPF006125.0E-5852872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.121852875IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MSQSGYDINV LFQEAQTRWL KPAEVLYILQ NHEKYKFTHE PPHKPTSGSL FLFNKRVLRF  60
FRRDGHNWRK KKDGRSVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLDPEYEHI  120
VLVHYREVGE GKSTPRSAVQ LSPGLSSAFS PSTTSHTTHN RDSTSAVSDL YDPDRSSSSP  180
SSTEISSEIV TKDNGLETLT GFTSSPKDGV SQFLRRLEEH LSLNEDSIKE TDPLCSEEGI  240
TNDPELLEFA KQISEKDHYV NMLHGPENIV NNQCYDFGEP PGLQLQSNNV VHLQDTGDGG  300
KYHQPFVEYA DGSKESISWN EVLESCKVSS GVDYQEKPQP SLREPAEEHE YSHWLNFNGN  360
NVRNSSELLP QDVENFDIPL YSPVLGTHET NPDYYSMLYD EGHLGVPIEP DSSLTVSRQQ  420
KFTIREISPE WGFTSEATKV IIVGSFLCDP SESAWKCMFG ETEVPTEIIQ EGVLCCVAPP  480
HLPGKVTFCV TSGNRESCSE VREFEYRAKS SCPHCNLTQM EVAKGPEELL LLVRFVQMLL  540
SGSSMQKEDS IETGIQLLRK LKTDDGLWSR IIETLLIGNG TSTGTIDWLL EQLLKDKLQQ  600
WLSFKSQERR DQPSCTLSKK EQGIIHMVAG LGFEWALSPI ISQGIGVNFR DINGWTALHW  660
AARFGREKMI AALLAFGASA GVVTDPTSQD PVGKTPASIA ADSGHKGLAG YLSEVALTSH  720
LSSLTLGESE LSKGSAEVEA EKTVDSISKG SFSAYEDQVS LKDTLAAVRN AAQAAARIQA  780
AFRAHSFRKR QKEAAMLANS IDEYGLNSSD IHEVSAMSKL AFGNAHDYKS ATLYIQKKYR  840
GWKVRQDFLA FRRKVVKIQA HVRGYQVRKR YKVICWAVGI LEKAVLRWRR KGVGLRGFRN  900
EGEAIEDSED EDILKLFRKQ KVDAAIEEAV SRVLSMVDCL EARQQYRRML ERYREAKAEV  960
IETSEAAATS ADMENDDILP FQVGAASNYL T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G010200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633510.10.0calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2C9UP280.0A0A2C9UP28_MANES; Uncharacterized protein
STRINGcassava4.1_000943m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]