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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G009600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CAMTA | ||||||||
Protein Properties | Length: 987aa MW: 110339 Da PI: 5.4532 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.2 | 2.5e-56 | 13 | 127 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwlk+ e++ iL+n++k++lt+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+n Manes.12G009600.2.p 13 QEaQARWLKPAEVLYILQNHDKYQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEQN 102 56599************************************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhyle 116 ++fqrr+yw+L++++e+ivlvhy+e Manes.12G009600.2.p 103 SNFQRRSYWMLDSAYEHIVLVHYRE 127 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.708 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.6E-76 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.6E-49 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.3E-9 | 418 | 507 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.18E-18 | 423 | 506 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 3.7E-8 | 424 | 505 | IPR002909 | IPT domain |
CDD | cd00102 | 1.42E-4 | 425 | 506 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 6.0E-15 | 613 | 713 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.937 | 619 | 711 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 8.24E-16 | 622 | 713 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.68E-13 | 639 | 711 | No hit | No description |
Pfam | PF12796 | 5.3E-7 | 640 | 712 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.953 | 652 | 684 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.5E-4 | 652 | 681 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3700 | 691 | 720 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 18 | 769 | 791 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.492 | 770 | 798 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.92E-7 | 811 | 879 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 4.5 | 827 | 849 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 828 | 857 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.021 | 830 | 848 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0014 | 850 | 872 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.846 | 852 | 875 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-5 | 853 | 872 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 987 aa Download sequence Send to blast |
MSQSGYDINV LFQEAQARWL KPAEVLYILQ NHDKYQLTQE PPQKPTSGSL FLFNKRVLRF 60 FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE QNSNFQRRSY WMLDSAYEHI 120 VLVHYREIGE GKSTPGPAAQ LSPGFSSSFS PSQTSYTTQN PDSTSAITDK YDPYRNSSSP 180 SSIEVSSEMV TKENGLDATT EFTSYRKDEV SQYLRRLEEQ LSLTEDSIKE IDPLCSEERA 240 TDNTELLEYE KQIPKEDNSA NLLFRPEYFV NNQSYGGHAG MQLQTNNLVH LQDAGDSGKY 300 DQSYLDKYAD GNNESVSWNE VLDPSKASSG AEYQEKPQPS LRGPAEEHEY SGWLNFNGTN 360 ARNSSLLLHQ EVENFEIPAY APVIGSHETN PDYYSMLYDP GQLGVPIEAD SSLTVAQQQK 420 FIIWEISPDW GFTSEATKVI VVGSFLCDPS QSAWTCMFGD TEVPTEIIQE GVLRCQAPPH 480 LPGKVTFCIT SGNRESCSEV REFEYRAKSS CPHCSLSKTE VAKSPEELLL LVRFVQFLLS 540 DPSLQKEDSI ETGIQLMRKL KTGDDSWGSI IEALLVGNGT STGTVDWLLQ QLLKDKLQQW 600 LSSKFQERQD QPSCTLSKKE QGIIHMVAGL GFEWALSPIL SHGVSIDFRD INGWTALHWA 660 ARFGREKMVA ALIALGASAG AVTDPTSQDP IGKTPASIAA NSGHKGLAGY LSEVALTSHL 720 SSLTIEESEL SKGSAEVEAE RTVDAISKGS FAVSEDQVSL KDTLAAVRNA AQAAARIQSA 780 FRAHSFRKRQ EREAATSAYS IDEYGVNSSD IQGLSAMSKL AFRNARDYNS AALSIQKKYR 840 GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRN 900 EAEPNDNDDE SEDEDILKVF RKQKVDVAIG ESVSRVLSMV DSPEARLQYH RMLERYRQAK 960 AELGETSEAA ATSLADMEND DMYHFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G009600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631162.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Refseq | XP_021631163.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A251K1R7 | 0.0 | A0A251K1R7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000943m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G009600.2.p |
Publications ? help Back to Top | |||
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