PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G009600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CAMTA
Protein Properties Length: 987aa    MW: 110339 Da    PI: 5.4532
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G009600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.22.5e-56131273116
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk+ e++ iL+n++k++lt+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+n
  Manes.12G009600.1.p  13 QEaQARWLKPAEVLYILQNHDKYQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEQN 102
                          56599************************************************************************************* PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhyle 116
                          ++fqrr+yw+L++++e+ivlvhy+e
  Manes.12G009600.1.p 103 SNFQRRSYWMLDSAYEHIVLVHYRE 127
                          ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.7088134IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7611129IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4914127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.3E-9418507IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.18E-18423506IPR014756Immunoglobulin E-set
PfamPF018333.7E-8424505IPR002909IPT domain
CDDcd001021.42E-4425506No hitNo description
Gene3DG3DSA:1.25.40.206.0E-15613713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.937619711IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-16622713IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-13639711No hitNo description
PfamPF127965.3E-7640712IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.953652684IPR002110Ankyrin repeat
SMARTSM002487.5E-4652681IPR002110Ankyrin repeat
SMARTSM002483700691720IPR002110Ankyrin repeat
SMARTSM0001518769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492770798IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-7811879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584828857IPR000048IQ motif, EF-hand binding site
PfamPF006120.021830848IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.846852875IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5853872IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MSQSGYDINV LFQEAQARWL KPAEVLYILQ NHDKYQLTQE PPQKPTSGSL FLFNKRVLRF  60
FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE QNSNFQRRSY WMLDSAYEHI  120
VLVHYREIGE GKSTPGPAAQ LSPGFSSSFS PSQTSYTTQN PDSTSAITDK YDPYRNSSSP  180
SSIEVSSEMV TKENGLDATT EFTSYRKDEV SQYLRRLEEQ LSLTEDSIKE IDPLCSEERA  240
TDNTELLEYE KQIPKEDNSA NLLFRPEYFV NNQSYGGHAG MQLQTNNLVH LQDAGDSGKY  300
DQSYLDKYAD GNNESVSWNE VLDPSKASSG AEYQEKPQPS LRGPAEEHEY SGWLNFNGTN  360
ARNSSLLLHQ EVENFEIPAY APVIGSHETN PDYYSMLYDP GQLGVPIEAD SSLTVAQQQK  420
FIIWEISPDW GFTSEATKVI VVGSFLCDPS QSAWTCMFGD TEVPTEIIQE GVLRCQAPPH  480
LPGKVTFCIT SGNRESCSEV REFEYRAKSS CPHCSLSKTE VAKSPEELLL LVRFVQFLLS  540
DPSLQKEDSI ETGIQLMRKL KTGDDSWGSI IEALLVGNGT STGTVDWLLQ QLLKDKLQQW  600
LSSKFQERQD QPSCTLSKKE QGIIHMVAGL GFEWALSPIL SHGVSIDFRD INGWTALHWA  660
ARFGREKMVA ALIALGASAG AVTDPTSQDP IGKTPASIAA NSGHKGLAGY LSEVALTSHL  720
SSLTIEESEL SKGSAEVEAE RTVDAISKGS FAVSEDQVSL KDTLAAVRNA AQAAARIQSA  780
FRAHSFRKRQ EREAATSAYS IDEYGVNSSD IQGLSAMSKL AFRNARDYNS AALSIQKKYR  840
GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRN  900
EAEPNDNDDE SEDEDILKVF RKQKVDVAIG ESVSRVLSMV DSPEARLQYH RMLERYRQAK  960
AELGETSEAA ATSLADMEND DMYHFQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G009600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631162.10.0calmodulin-binding transcription activator 4 isoform X1
RefseqXP_021631163.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A251K1R70.0A0A251K1R7_MANES; Uncharacterized protein
STRINGcassava4.1_000943m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]