PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G012800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CAMTA
Protein Properties Length: 1074aa    MW: 119918 Da    PI: 5.62
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G012800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1184.98.7e-58211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n+
  Manes.06G012800.1.p  21 EAQHRWLRPAEICEILRNYQKFHIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNE 110
                          459*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+yw+Le+el +iv+vhylevk
  Manes.06G012800.1.p 111 NFQRRSYWMLEQELMHIVFVHYLEVK 136
                          ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.38115141IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-8418136IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.0E-6480569IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.89E-17483568IPR014756Immunoglobulin E-set
PfamPF018335.2E-6483561IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.6E-17648779IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-16652777IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.529655778IPR020683Ankyrin repeat-containing domain
CDDcd002044.38E-13668776No hitNo description
SMARTSM002480.0038717746IPR002110Ankyrin repeat
PROSITE profilePS5008810.472717749IPR002110Ankyrin repeat
SMARTSM000150.19890912IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151891920IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-7892941IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0016893911IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05913935IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.102914938IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011916935IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MAGRGSYGLG PRLDIQQLFI EAQHRWLRPA EICEILRNYQ KFHIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EQELMHIVFV HYLEVKGNRT NSSPSNSLAA SYNKEPSGNT DSTSPTSTLA SFCEDADSAD  180
SQQSSAGRHT FLESPQMQSN PAIDKINAGV LSSEFLHHGS DNREVRSSNP VSGSVSYVHR  240
DGPGANGGTC ITESESLASW EEVLEQYAVG NKNAASNLSV TSNHSNPTGI GRNEIFSEIL  300
AGGGAAKDEL SGSLTMESHW QIPFENSSLH LPEGSLDQTL DLEFAYNLDP RFFDQRAHNV  360
DLQNAFDEIF SCAVQHNEEL VQNNLQMQLA NSEPHLSMQT KSENEISVGE NNIYAFKPAL  420
LGGEEGLKKV DSFSRWVTKE LGEVDDLHMR SSSGLSWSTV ECGNVVTEES LSPSLSQDQL  480
FSIIDFSPKW AYADSKTEVH ITGTFLRSQQ EVAKYNWSCM FGEVEVPAEV LADGILCCYA  540
PPHNVARVPF YVTCSNRLAC SEVREFDYQV GSAQDVDVKE VYSASINDMH LHLRLERLLS  600
VRSSSAPDCL SDGARAKQRL VSEIILLREE DEGCPIAEPT PERPLSQDEI KWQVLQKAMQ  660
EKLYSWLLHM VAENDKGPSV LDDEGQGALH LVAALGYDWA IKPSITAGVP INFRDVNGWT  720
ALHWAAFYGR EQTVAALVLL GADTRVLTDP SPEFPLGRTP ADLASGNGHK GISGFLAESA  780
LTSYLQLLTL NDPKEGVAPD VSGMTAVQTI AERMATPVNE TDVPNLLPLK DSLTAIRNAT  840
QAANRIHQVF RMQSFQRKQL TESGGDGSNI FDERALALIA GKTNKPSDGL ANAAAIQIQK  900
KFRGWKKRKE FLIIRQRIVK LQAHVRGHQV RKQYRTIIWS VGILEKVILR WRRKGSGLRG  960
FRRDALTKDS NVQCVPAPAP PPPPPKEDEY DFLKEGRKQN EERQQKALSR VKSMYHCEEG  1020
QAQYRRLLTY FEQLRETTES EMVVSSPSEM RYGDEELFDS LLDDDTFMSI AFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G012800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616290.10.0calmodulin-binding transcription activator 2-like isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A2C9VNZ20.0A0A2C9VNZ2_MANES; Uncharacterized protein
STRINGcassava4.1_000687m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]