PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G050300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 264aa    MW: 29437.9 Da    PI: 7.59
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G050300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18169203135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.05G050300.1.p 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-832259IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-16163213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385167199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-14167201IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.9E-14167226No hitNo description
CDDcd002023.57E-13168215No hitNo description
PfamPF003207.0E-16169203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDVYGISTPD CFRIDDLLDF SNEDLFSSST STSSSVATDH HRHLSLPENP SIHHFPSSAP  60
FNSGLSTDFT DHLLVPSDDV AELEWLSQFV DDSCIEFPAN SLSGTINIRS ETSFCAKARS  120
KRSRGTAINA TPWISSSPEI PSPTTGKLKS KKEINRASSP TAEGGVRRCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVLEL RRQKEMMMQQ  240
QQQQEEQRIY HHHLHPKQNF EIC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G050300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612232.10.0GATA transcription factor 4-like
SwissprotO497412e-82GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2C9VUW10.0A0A2C9VUW1_MANES; GATA transcription factor
STRINGcassava4.1_022929m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-75GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]