PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G159200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

SRS

Protein Properties

Length: 268aa MW: 29000.8 Da PI: 7.6608

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G159200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.2	1.2e-57	76	236	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstkls 92 ++ C+dCGn+akk+C+++RCRtCCksrg+dCa h+kstWvpaa+rr r+++ ss +++ + +kr+re+ s++++ + st+ + Manes.04G159200.1.p 76 SSVCRDCGNRAKKECEYRRCRTCCKSRGYDCAPHIKSTWVPAARRRGRHATDVGGSSGSSSGGggGGDGNKRPRENVSATSN-SFSTSNN 164 578*******************************************8888777666655555678888888887332222.2222223 PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +a + +++ +s lP++v+++avfrcvrv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e Manes.04G159200.1.p 165 NAAAFFSFDNASncqdasfkqsLPSQVRAPAVFRCVRVTAISGGEAEVAYQAMVNISGHVFKGFLYDQGIDE 236 3333333333335666677778*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-55	77	235	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.8E-26	78	120	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:2.30.27.10	4.9E-4	109	156	No hit	No description
TIGRFAMs	TIGR01624	1.4E-26	187	234	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MLGLHNIFLI TPPVQPPPPP SSSFHHPDQQ PISVHEQCNI LNNQDSWTTL KRYNLQESSR 60 DALNIDGDNE NCNTSSSVCR DCGNRAKKEC EYRRCRTCCK SRGYDCAPHI KSTWVPAARR 120 RGRHATDVGG SSGSSSGGGG GGDGNKRPRE NVSATSNSFS TSNNNAAAFF SFDNASNCQD 180 ASFKQSLPSQ VRAPAVFRCV RVTAISGGEA EVAYQAMVNI SGHVFKGFLY DQGIDENNLN 240 RDSTSPIVDP PDPYLASATH RVFQGNE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G159200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610342.1	0.0	protein SHI RELATED SEQUENCE 6 isoform X3
Swissprot	Q94CK9	8e-46	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2C9W2Y3	0.0	A0A2C9W2Y3_MANES; Uncharacterized protein
STRING	cassava4.1_013960m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-42	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Manes.04G159200.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]