PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G202200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CAMTA
Protein Properties Length: 821aa    MW: 93439.2 Da    PI: 7.9297
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G202200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11261.6e-39301353118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++ei+aiL n++ + +  ++ + pks           ++frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n
  Manes.03G202200.1.p  30 EEaSSRWLRPNEIHAILCNYKYFVINVKPVHLPKS-----------KNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDN 108
                          45599*******************99999998875...........78****************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ptf rrcywlL+++le+ivlvhy+e++
  Manes.03G202200.1.p 109 PTFVRRCYWLLDKTLEHIVLVHYRETQ 135
                          ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143762.81225140IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-6128135IPR005559CG-1 DNA-binding domain
PfamPF038598.3E-3431133IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.36E-9283359IPR014756Immunoglobulin E-set
CDDcd002043.64E-15456566No hitNo description
PfamPF127961.5E-7457536IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-17457571IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-17465570IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.184474578IPR020683Ankyrin repeat-containing domain
SMARTSM002481.0E-6507536IPR002110Ankyrin repeat
PROSITE profilePS5008812.209507539IPR002110Ankyrin repeat
SuperFamilySSF525402.12E-7615721IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001530651673IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.291655681IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236671696IPR000048IQ motif, EF-hand binding site
SMARTSM00015270674692IPR000048IQ motif, EF-hand binding site
SMARTSM000158.6E-5693715IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.127694718IPR000048IQ motif, EF-hand binding site
PfamPF006129.0E-4695715IPR000048IQ motif, EF-hand binding site
SMARTSM000159.5773795IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187775803IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MESGVQGLLV GSDIHGFHTL QDLDYGKIME EASSRWLRPN EIHAILCNYK YFVINVKPVH  60
LPKSKNFRKD GHNWKKKKDG KTVKEAHEHL KVGNEERIHV YYAHGEDNPT FVRRCYWLLD  120
KTLEHIVLVH YRETQEVQGS PVTPVNSNSS SVSEQSPWLL SEEFDSRAGH AYYVGVKEAI  180
DPGDCLTVRN HEMRLHEINT LEWDELVTND LNNSHMPKED KNMSFDQHNQ IAVNGSRNDG  240
IPLPVYNLSA EVPPLDYLTE PIARNNTSCL NIPEDAYSKA TKVQGNSDIL VTGYFHEQFL  300
HLAKLDLCCV CGDACVRAEI VQAGVYRCLV PQHSPGLVDL FLSLDGHKPI SQVLNFEYRP  360
PLRDHVVSLE DKPKWDEFKL QMRLACLLFS TSRSLSILTS KVSPANLKEA KKFAHKTSSI  420
FHSWTYLNKS IEDDRVSFSQ AKDGFFELTL QNMLKEWLLE RVVEGRKTTE YDAQGQGAIH  480
LCALLGYTWA IHLFSWAGLS LDFRDKHGWT ALHWAAYYGR EKMVAILLSA GAKPNLVTDP  540
TSEHPGGCTA ADLASAKGYD GLAAYLSEKS LVAQFKDMSL AGNVSGSLQT SSTDSINSAN  600
LSEEQLYLKD TLAAYRTAAD AAARIQAAIK EHSLKVRTKA VQVANPEDEA RNIVAAMKIQ  660
HAFRNYETRK RMAAAARIQH RFRTWKIRKE FLNMRRVAIR IQAAFRGFQV RKQYRKIVWS  720
VGVLEKAILR WRLKRKGFRG LHVDPIEVVA DEREENDAEE DFFQVSRKQA EERVERAVVR  780
VQAMFRSKKA QEEYRRMKLT CNQAELEYGG LLDHDIDLDR *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G202200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607034.10.0calmodulin-binding transcription activator 5 isoform X2
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A2C9W9590.0A0A2C9W959_MANES; Uncharacterized protein
STRINGPOPTR_0008s10730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]