PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G084500.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family STAT
Protein Properties Length: 672aa    MW: 75539 Da    PI: 5.3197
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G084500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT204.39.8e-642223431122
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                          +dvvl+na++q+++k+vevvasLlyadsg +vek++d+eapLLisydG+ef+++drp+kll+GrasfklkisqLsskcdnrLfrikfe+p
  Manes.03G084500.4.p 222 VDVVLSNAVSQAMDKEVEVVASLLYADSGFPVEKTSDDEAPLLISYDGIEFAASDRPSKLLHGRASFKLKISQLSSKCDNRLFRIKFEMP 311
                          69**************************************************************************************** PP

                 STAT  91 klkkypfleavskpirCisrsrntrsssltkk 122
                          ++  ++fl+a+s+pirCisrsrn r+  +t+k
  Manes.03G084500.4.p 312 EFGGFQFLQAFSHPIRCISRSRNPRTPFHTWK 343
                          *************************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498995.28E-523168IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.104.3E-6592659IPR000980SH2 domain
SuperFamilySSF555506.7E-8595659IPR000980SH2 domain
PROSITE profilePS500019.648600671IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MMGTNVINTK DYTLLEDFRM EIELNAWNFS FSFWVYLIDS TTAFPATIIN QVYSNTTSSS  60
PFIALNENKL MTLSPMSLLQ KEAPDPSNST LLTEASHASI ENEFPLENWV HVGCGVFTDV  120
FRLHINGEIV GEWSLSSFNK DSMSNGFGKI TLVGASGDDG LQGYVYDAEV LTLSSSIKDH  180
YSKDPPLQLC IDDSSTSDIE EGIDGIWSIV GGKASCRRIF SVDVVLSNAV SQAMDKEVEV  240
VASLLYADSG FPVEKTSDDE APLLISYDGI EFAASDRPSK LLHGRASFKL KISQLSSKCD  300
NRLFRIKFEM PEFGGFQFLQ AFSHPIRCIS RSRNPRTPFH TWKRPTSASC SLNGSSELKH  360
NSVHAVKPNT SSKRVKMGQE NKTTVEQPDE ECNSHAWTAN QVENELRSKL EGSSDNLEEV  420
GNSTSDSEST EERDSDVKVV SSSGHSISDL AIFKYCLGGL TDRALLLKEV ATSASEEDLL  480
RLAHEVSLYS GCYHHRHQIM IAKRLIMEGT KVWNSIAQNN HAVHWETVVF EIEEQFMKIA  540
CCSSRSLMEQ DFELLRRIAG CHEYIAQENF EKMWCWLYPV AFTLSREWIN TMWNSKSPKW  600
IEGFITKEEA ELSLQGPRGL QEPGTFILRF PTSRSWPHPD AGSLIVTYVG SDYTVHHRLL  660
RLDHIYRPRR I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G084500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608299.10.0uncharacterized protein LOC110612000
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A251L9680.0A0A251L968_MANES; Uncharacterized protein
STRINGXP_002528483.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]