PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.03G084500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | STAT | ||||||||
Protein Properties | Length: 672aa MW: 75539 Da PI: 5.3197 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 204.3 | 9.8e-64 | 222 | 343 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 +dvvl+na++q+++k+vevvasLlyadsg +vek++d+eapLLisydG+ef+++drp+kll+GrasfklkisqLsskcdnrLfrikfe+p Manes.03G084500.2.p 222 VDVVLSNAVSQAMDKEVEVVASLLYADSGFPVEKTSDDEAPLLISYDGIEFAASDRPSKLLHGRASFKLKISQLSSKCDNRLFRIKFEMP 311 69**************************************************************************************** PP STAT 91 klkkypfleavskpirCisrsrntrsssltkk 122 ++ ++fl+a+s+pirCisrsrn r+ +t+k Manes.03G084500.2.p 312 EFGGFQFLQAFSHPIRCISRSRNPRTPFHTWK 343 *************************9988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 5.28E-5 | 23 | 168 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 4.3E-6 | 592 | 659 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 6.7E-8 | 595 | 659 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.648 | 600 | 671 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 672 aa Download sequence Send to blast |
MMGTNVINTK DYTLLEDFRM EIELNAWNFS FSFWVYLIDS TTAFPATIIN QVYSNTTSSS 60 PFIALNENKL MTLSPMSLLQ KEAPDPSNST LLTEASHASI ENEFPLENWV HVGCGVFTDV 120 FRLHINGEIV GEWSLSSFNK DSMSNGFGKI TLVGASGDDG LQGYVYDAEV LTLSSSIKDH 180 YSKDPPLQLC IDDSSTSDIE EGIDGIWSIV GGKASCRRIF SVDVVLSNAV SQAMDKEVEV 240 VASLLYADSG FPVEKTSDDE APLLISYDGI EFAASDRPSK LLHGRASFKL KISQLSSKCD 300 NRLFRIKFEM PEFGGFQFLQ AFSHPIRCIS RSRNPRTPFH TWKRPTSASC SLNGSSELKH 360 NSVHAVKPNT SSKRVKMGQE NKTTVEQPDE ECNSHAWTAN QVENELRSKL EGSSDNLEEV 420 GNSTSDSEST EERDSDVKVV SSSGHSISDL AIFKYCLGGL TDRALLLKEV ATSASEEDLL 480 RLAHEVSLYS GCYHHRHQIM IAKRLIMEGT KVWNSIAQNN HAVHWETVVF EIEEQFMKIA 540 CCSSRSLMEQ DFELLRRIAG CHEYIAQENF EKMWCWLYPV AFTLSREWIN TMWNSKSPKW 600 IEGFITKEEA ELSLQGPRGL QEPGTFILRF PTSRSWPHPD AGSLIVTYVG SDYTVHHRLL 660 RLDHIYRPRR I* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.03G084500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608299.1 | 0.0 | uncharacterized protein LOC110612000 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A251L968 | 0.0 | A0A251L968_MANES; Uncharacterized protein | ||||
STRING | XP_002528483.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.03G084500.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|