![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.03G056100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23281.3 Da PI: 4.5694 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g+Wv+eIr p++ r r++lg+f+tae+Aa a +aa +l+g Manes.03G056100.1.p 19 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTAEKAALAFDAALYCLRG 69 79*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-11 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.53E-30 | 19 | 79 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-21 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.089 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKPGTSSEQ PSSDKNHEPK YKGVRKRKWG KWVSEIRLPN SRERIWLGSF DTAEKAALAF 60 DAALYCLRGR EAKFNFPDNP PNIAGGQSLS PQEIQVVAAR FANENSRMIR STTTSVGESS 120 SSQVMDQCLS SSSDGAAQVD SDTIDWSSIL NELDSTEGAP EYGMYPGLGN QYYPSQPYVF 180 DDYHINNGNN DDNQNGDEAY SHQSFLWNF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 20 | 77 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 27 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.03G056100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607005.1 | 1e-156 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 6e-51 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2C9W4U1 | 1e-155 | A0A2C9W4U1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034356m | 1e-156 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 8e-43 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.03G056100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|