PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G102300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 353aa    MW: 40905.4 Da    PI: 4.7305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G102300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68e-5691381129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL+      ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg
  Manes.02G102300.1.p   9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATG 97 
                          69****************************.9***************953432234667******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk++++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
  Manes.02G102300.1.p  98 RDKAIYD-KAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 138
                          *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-615158IPR003441NAC domain
PROSITE profilePS5100559.7119158IPR003441NAC domain
PfamPF023655.9E-2910137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE PWDLQDRCRI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATVA GFWKATGRDK AIYDKAKLIG MRKTLVFYKG  120
RAPNGQKTDW IMHEYRLESD ENGPPQEEGW VVCRAFKKRT TGQTRNNEGW DSSYFYDESS  180
VVSSVIDPTD YISRQPQNFM PQNFFCKQET ETDNLSFMQS DDFVQLPQLE SSTLPLIKRP  240
SLISLIPQNN NSNNNNNKDD EEEEQARGCN INNLNNNKKK ITDWRAFDKF VASQLSQEDR  300
YNCENAVSSF GEENSSDMSL LLLQSGRDDE NKFNGFLSSC SDCDIGICIF DK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51916317170NO APICAL MERISTEM PROTEIN
1ut4_B2e-51916317170NO APICAL MERISTEM PROTEIN
1ut7_A2e-51916317170NO APICAL MERISTEM PROTEIN
1ut7_B2e-51916317170NO APICAL MERISTEM PROTEIN
3swm_A3e-51916320173NAC domain-containing protein 19
3swm_B3e-51916320173NAC domain-containing protein 19
3swm_C3e-51916320173NAC domain-containing protein 19
3swm_D3e-51916320173NAC domain-containing protein 19
3swp_A3e-51916320173NAC domain-containing protein 19
3swp_B3e-51916320173NAC domain-containing protein 19
3swp_C3e-51916320173NAC domain-containing protein 19
3swp_D3e-51916320173NAC domain-containing protein 19
4dul_A2e-51916317170NAC domain-containing protein 19
4dul_B2e-51916317170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G102300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052250.0KR605225.1 Manihot esculenta NAC transcription factors 87 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603580.10.0NAC domain-containing protein 37-like
RefseqXP_021603581.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-164NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0M3R8660.0A0A0M3R866_MANES; NAC transcription factors 87
STRINGcassava4.1_031776m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-164vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  4. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]