PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G006700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 1003aa MW: 110158 Da PI: 5.5415

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G006700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	586	636	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Manes.02G006700.1.p 586 EKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 636 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	575	656	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-27	588	636	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-22	892	982	No hit	No description
PROSITE profile	PS51745	23.919	897	979	IPR000270	PB1 domain
SMART	SM00666	2.7E-25	897	979	IPR000270	PB1 domain
Pfam	PF00564	1.7E-17	898	978	IPR000270	PB1 domain
CDD	cd06407	1.08E-37	898	978	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.9E-26	898	979	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MAEQEDDKSK DNQSVAGNKG ETLMDLDLDL DTSWPLDQIY FLSNPLSPLL LSSSDQPCSP 60 LWAFSDADDE RLAASSSSHA THPLRLSDYP IFLTCNPSSL AESQTENDDK RKLPSPLLGL 120 MPFDNPDGYC IIKERMTQAL RNFKESTEQH VLAQIWAPVK NGARYVLTTS GQPFVIDPHS 180 NGLHQYRMVS LTYIFSLDGE FECEPGLPGR VFRQKLPEWT PNVQYYSSKE YSRRDHALHY 240 NVQGTLALPV FEPSGQSCVG VIELIMTSQK INYGPEVDKV CKALKAVNLK SSEILDHPST 300 QICNEGRKNA LAEILEILTV VCETHKLALA QTWIPCMHRS VLAFGGGLKK SCTSFDGSCN 360 GQVCMSTTDV AFYVVDPHMW GFREASLEHH LQKGQGVTGR AFLSHNACFC PDITQFCKTE 420 YPLVHYARMF GLTGCFAICL RSSHTGDDEY ILEFFLPPGI SDVFQQKALL GSLLATMKQH 480 FQSLKVASGM DLEEEEGFVE IIQTSVSGKL DLRLECIQTP ESPESLPNVN TSPKEGQMAQ 540 VDPVVNLDVV NNGGSTGDAE GGHFPTSPPE NKGNKKPSER KRGKTEKTIS LEVLQQYFSG 600 SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKRVIESV QGAEGTFDLT 660 PIATSPLPVA FGSISWPSNL NGCNQQNSPN SRSSEPNNER NGFPICKVAG SEEQSGSENQ 720 LPGGRVISHE ELFLQNCFSP EIGQGSSRHK AGNVSREESA GTPTSHGSCQ GSLANDIAPA 780 KVASASPVQE QGNEVGTIPE LSFQPKGKPN LSALYPIPDA FVATEAQAPF RERLIEDAGS 840 SKDLRNLCPS VADTMLEERV PEYSWTNHPG PEFPTKQSMA ALEHATPRVT ARQEMRFVTI 900 KATYREDIIR FRISVGSGIT ELKEEVAKRV KLEVGSFDIK YLDDDHEWVL IACDADLHEC 960 IDISRLSGGN IIRLSIHDVN TNLGSSCESN GELLLGCTYG KV*

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MAEQEDDKSK DNQSVAGNKG ETLMDLDLDL DTSWPLDQIY FLSNPLSPLL LSSSDQPCSP  60
LWAFSDADDE RLAASSSSHA THPLRLSDYP IFLTCNPSSL AESQTENDDK RKLPSPLLGL  120
MPFDNPDGYC IIKERMTQAL RNFKESTEQH VLAQIWAPVK NGARYVLTTS GQPFVIDPHS  180
NGLHQYRMVS LTYIFSLDGE FECEPGLPGR VFRQKLPEWT PNVQYYSSKE YSRRDHALHY  240
NVQGTLALPV FEPSGQSCVG VIELIMTSQK INYGPEVDKV CKALKAVNLK SSEILDHPST  300
QICNEGRKNA LAEILEILTV VCETHKLALA QTWIPCMHRS VLAFGGGLKK SCTSFDGSCN  360
GQVCMSTTDV AFYVVDPHMW GFREASLEHH LQKGQGVTGR AFLSHNACFC PDITQFCKTE  420
YPLVHYARMF GLTGCFAICL RSSHTGDDEY ILEFFLPPGI SDVFQQKALL GSLLATMKQH  480
FQSLKVASGM DLEEEEGFVE IIQTSVSGKL DLRLECIQTP ESPESLPNVN TSPKEGQMAQ  540
VDPVVNLDVV NNGGSTGDAE GGHFPTSPPE NKGNKKPSER KRGKTEKTIS LEVLQQYFSG  600
SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKRVIESV QGAEGTFDLT  660
PIATSPLPVA FGSISWPSNL NGCNQQNSPN SRSSEPNNER NGFPICKVAG SEEQSGSENQ  720
LPGGRVISHE ELFLQNCFSP EIGQGSSRHK AGNVSREESA GTPTSHGSCQ GSLANDIAPA  780
KVASASPVQE QGNEVGTIPE LSFQPKGKPN LSALYPIPDA FVATEAQAPF RERLIEDAGS  840
SKDLRNLCPS VADTMLEERV PEYSWTNHPG PEFPTKQSMA ALEHATPRVT ARQEMRFVTI  900
KATYREDIIR FRISVGSGIT ELKEEVAKRV KLEVGSFDIK YLDDDHEWVL IACDADLHEC  960
IDISRLSGGN IIRLSIHDVN TNLGSSCESN GELLLGCTYG KV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G006700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056270	3e-58	KX056270.1 Citrus trifoliata transcription factor NLP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021604080.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2C9WB87	0.0	A0A2C9WB87_MANES; Uncharacterized protein
STRING	cassava4.1_000904m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Manes.02G006700.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]