PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G087500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 545aa    MW: 60489.7 Da    PI: 7.0361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G087500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-14741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Manes.01G087500.1.p  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                         99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-10545No hitNo description
CDDcd002021.13E-15651No hitNo description
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.1E-9284380IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RADPDDYEDH  60
RVSRGKSISI NKNKDVKLLK RKANYDNGVV GRIAPDYYQG YRKVLDEDTS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSIVWDTMVP SRKRTCVNRT KPSPVEKLTK DLYTIWHEQQ  180
SSCFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR DEESEASSLS VENKQYSTSE  240
AYSQTVTVPV HNETINSNIQ SIVIEKATNP TGPGMQVQQE QLKRDKSHHE RAQILGNHNS  300
PLCDVDLNEI LNFEEFAQYL TNEEQQQLLK YLPLVDTAKL PDSIRSMFDS PQFKENISFF  360
QQLLVEGVFD LSFSGAKAEE CNTLKRLTLS NLSKSKWVER YHELKKCKNS TGKSLVGRGL  420
NVVMSSNSIA AKRSRDNVGQ KIPEVKVMKS PKRINMKTTY ENKEVMDNDG SCFSPRSLFA  480
LPPDGGSLML DSLHYVDESS DQDLLLHVPS NGSFPQAELL HPTSSFGQQA STSNSSRYPH  540
LVRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G087500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632304.10.0GATA transcription factor 26
SwissprotQ8W4H11e-165GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2C9WJ720.0A0A2C9WJ72_MANES; Uncharacterized protein
STRINGcassava4.1_005076m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-167GATA transcription factor 26