PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000819497
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Nin-like
Protein Properties Length: 263aa    MW: 30047.3 Da    PI: 4.9595
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000819497genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.48.9e-26152200452
         RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWPhRk++sl
  MDP0000819497 152 PLELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPHRKLRSL 200
                    6899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052135221IPR003035RWP-RK domain
PfamPF020422.7E-23153200IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MADSIFSQLL VPKIETDPHD EFNSSIQYYQ DPCQDQNAAL ESLRLENFNR CNSPPLPLQY  60
NSNQLPLMGS QDFEDLGIWD YILDDAAVPS PFDYEVVDEN PLTTMAESIV CSNSVSGDVF  120
RMLDWGMEGW GKHDGEGMTK NGSCSKRMSA APLELDEIQK YFDVPITQAA KELKVGLTVL  180
KRRCRELNIM RWPHRKLRSL NALIENVKGM GLTDELRMLE EHKRILEQLP DMELPERAKR  240
LRQACFKANY KKKRTWCLTA GP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352035.10.0PREDICTED: protein RKD4-like
TrEMBLA0A498KKN50.0A0A498KKN5_MALDO; Uncharacterized protein
STRINGXP_009352035.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-43RWP-RK domain-containing protein