PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000788505

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 820aa MW: 90889.5 Da PI: 6.7005

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000788505	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ MDP0000788505 589 AEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKI 640 589***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-25	593	640	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MLPSTPPNLK NEREDALMDF DFDLDVLWPL DPIHFLSYPT SPLLLPPNDQ PCTPLWAFSD 60 GDVESDYKLA GHVGQALSDC SQFVSCNSNS VTEGSTETES NRMLPSPFSG LEPLESSDGY 120 SLFNEKITQA LRYLKELTDQ PVLAQFWAPV KDGNRYVLTT LGQPFVLDPQ CIRLHQYRMA 180 CLMYMFSVDG ESDGVLGLPG RVFQHKLPEW TPNVQYYSIK EYARLRHAQQ YNVQGTLALP 240 VFEPSGRSCV GVLELIMISP LINYGPEVDK AVGLKSSEIL DHPSRQVSCS NEYMLATSCI 300 QIQICNEGRQ TALAEILKIL IVVSETHKLP LAQTWVPCMH RNVLAYDGGL KKSCTSFDGS 360 SMEQVCMSTT DVAFYIVDAH MWHFRDACVE HHLHKGQGVA GRAFLSHNAC FCEDITQFCK 420 SEYPVAHYAR MFGLAGSFAI CLQSTHTGND DYILEFFLPP SITDSHEQQT LLGSILAIMK 480 NHFRSLSVAS GIVLEEEGIV EIVQASKNNG LATRLQCILI PRSVESPPGP ALPYREEMVQ 540 LDSSKPQLVV GYDVANDGRN YVHEGGENNI SFPENKDIKK KPEKKRGKAE KSISLDVLQQ 600 YFAGSLKDAA KSLGVCPTTM KRICRHHGIS RWPSRKIKKI NHSLTKLQRV IESVHGAEGA 660 FGLTPLTASG SISRPWILNG TEGRAGIDNH LLDERMLSYE ELLLEHNRCL RDRGKGSNTS 720 NRGNSSTEAS ACTSTCHGSF QGSPGNGIAM VNPPFSDSAP KQSNTMPHIT GRQEMKSVTI 780 KATYKEDIIR FRVSMSSGFV DMKEIKTGRG HIRHQMCGL*

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MLPSTPPNLK NEREDALMDF DFDLDVLWPL DPIHFLSYPT SPLLLPPNDQ PCTPLWAFSD  60
GDVESDYKLA GHVGQALSDC SQFVSCNSNS VTEGSTETES NRMLPSPFSG LEPLESSDGY  120
SLFNEKITQA LRYLKELTDQ PVLAQFWAPV KDGNRYVLTT LGQPFVLDPQ CIRLHQYRMA  180
CLMYMFSVDG ESDGVLGLPG RVFQHKLPEW TPNVQYYSIK EYARLRHAQQ YNVQGTLALP  240
VFEPSGRSCV GVLELIMISP LINYGPEVDK AVGLKSSEIL DHPSRQVSCS NEYMLATSCI  300
QIQICNEGRQ TALAEILKIL IVVSETHKLP LAQTWVPCMH RNVLAYDGGL KKSCTSFDGS  360
SMEQVCMSTT DVAFYIVDAH MWHFRDACVE HHLHKGQGVA GRAFLSHNAC FCEDITQFCK  420
SEYPVAHYAR MFGLAGSFAI CLQSTHTGND DYILEFFLPP SITDSHEQQT LLGSILAIMK  480
NHFRSLSVAS GIVLEEEGIV EIVQASKNNG LATRLQCILI PRSVESPPGP ALPYREEMVQ  540
LDSSKPQLVV GYDVANDGRN YVHEGGENNI SFPENKDIKK KPEKKRGKAE KSISLDVLQQ  600
YFAGSLKDAA KSLGVCPTTM KRICRHHGIS RWPSRKIKKI NHSLTKLQRV IESVHGAEGA  660
FGLTPLTASG SISRPWILNG TEGRAGIDNH LLDERMLSYE ELLLEHNRCL RDRGKGSNTS  720
NRGNSSTEAS ACTSTCHGSF QGSPGNGIAM VNPPFSDSAP KQSNTMPHIT GRQEMKSVTI  780
KATYKEDIIR FRVSMSSGFV DMKEIKTGRG HIRHQMCGL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16737	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017180542.1	0.0	protein NLP6-like isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A498I7W7	0.0	A0A498I7W7_MALDO; Uncharacterized protein
STRING	XP_009347913.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000788505

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]