PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000584547

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 1053aa MW: 117304 Da PI: 6.3002

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000584547	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1e-28	637	688	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+kyFs+++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++ MDP0000584547 637 AEKDINLQVLRKYFSGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 688 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	627	708	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-24	641	688	IPR003035	RWP-RK domain
SMART	SM00666	1.1E-15	859	929	IPR000270	PB1 domain
PROSITE profile	PS51745	22.254	859	936	IPR000270	PB1 domain
SuperFamily	SSF54277	1.08E-18	860	927	No hit	No description
CDD	cd06407	6.01E-33	861	926	No hit	No description
Pfam	PF00564	6.5E-16	861	925	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.5E-19	861	932	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1053 aa Download sequence Send to blast
MEVRVVYTGK GWVEFVGKMD ENHRKTLRVE TGLRVEGELG RFPPSSFPLL SSLLIVRLLQ 60 GAVMDDGVLS PATMLGAQPD SAMDLDFMDE LFLEGCWLEA RDGPEFPNQS LPNTPLNPSF 120 FWHTLETNGN MAMTPSQNSN QEEMQTPFFK QLEEGPVNPQ SPCQSMIEDV VAYSGQSEDP 180 TIGRELSRRW WIGPTGNDGS ASSVTQRLMT ALMYIREVMR NKDVLVQVWV PVNRGGRDVL 240 TTNELFCLDP NCSRLAKYRD ISVNYQFSTG EDSTEMVKGL PGRVFSGKVP EWTPDARYFT 300 SDEYPRVGYA QQYDVSGTLA LPIFEQGSRT CLGVIEVVTT DQKIRYQPDI DGICKALEGC 360 DKPYHAALPE IQEILRSACE THKLPLAQTW VSCIEQGKDG CRHSDDNYIH CVSTVDHACH 420 VADPYIQGFH EACSEHHLLR GQGIVGRAFM TNQPCFSDDI TSFFKTEYPL SHHARMFNLH 480 AAVAIRLRST DTSSTDFVLE FFLPLECRDP KEQKKMLNSL SLIIQQTCRS LRVVTDKEVE 540 EETKFHVSEV IVPSDPGPSN IACFTEVQQN GNAVSMFPNK KQRKVLSVKL SKLRQHQEYS 600 NLKSVECGEE FSVLGEGEGS FSTVGASKTR EKRRAKAEKD INLQVLRKYF SGSLKDAAKS 660 IGVCSTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQRVID SVEGASGAFQ INSFYTNFPE 720 LTSPKLLGTS PFSNSKLSDQ PNQENLSPEG GDFSPQATAS KSPPSSCSQN SSSSQCCSSK 780 TRQHPFSCNV AGNDDPVGDN SRDGVLKRVR SEAGLHDFCQ DRTELLPRSQ SQKILSEQQN 840 LQSIPPSLKN NGRVAQVEVQ RVKVAYGDEK TRFRMQSNWR YEDLVQEIAK RFSIQDMSNF 900 DIKYLDDDSE RVLLTCDDDL EECVDIDGKE GWEEQSDEGM GVGKNNEGMV SPGFSPNVPM 960 RISQIPRSIL PPNRPNHSLL LNSKQKLQHG FQRFGLSVAK PTRSLCTKAV LSEIPNQELY 1020 GKVGANSTGP IPIGQLVGAV EKAAKTGAEF SL*

Sequence ? help Back to Top

Protein Sequence Length: 1053 aa Download sequence Send to blast

MEVRVVYTGK GWVEFVGKMD ENHRKTLRVE TGLRVEGELG RFPPSSFPLL SSLLIVRLLQ  60
GAVMDDGVLS PATMLGAQPD SAMDLDFMDE LFLEGCWLEA RDGPEFPNQS LPNTPLNPSF  120
FWHTLETNGN MAMTPSQNSN QEEMQTPFFK QLEEGPVNPQ SPCQSMIEDV VAYSGQSEDP  180
TIGRELSRRW WIGPTGNDGS ASSVTQRLMT ALMYIREVMR NKDVLVQVWV PVNRGGRDVL  240
TTNELFCLDP NCSRLAKYRD ISVNYQFSTG EDSTEMVKGL PGRVFSGKVP EWTPDARYFT  300
SDEYPRVGYA QQYDVSGTLA LPIFEQGSRT CLGVIEVVTT DQKIRYQPDI DGICKALEGC  360
DKPYHAALPE IQEILRSACE THKLPLAQTW VSCIEQGKDG CRHSDDNYIH CVSTVDHACH  420
VADPYIQGFH EACSEHHLLR GQGIVGRAFM TNQPCFSDDI TSFFKTEYPL SHHARMFNLH  480
AAVAIRLRST DTSSTDFVLE FFLPLECRDP KEQKKMLNSL SLIIQQTCRS LRVVTDKEVE  540
EETKFHVSEV IVPSDPGPSN IACFTEVQQN GNAVSMFPNK KQRKVLSVKL SKLRQHQEYS  600
NLKSVECGEE FSVLGEGEGS FSTVGASKTR EKRRAKAEKD INLQVLRKYF SGSLKDAAKS  660
IGVCSTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQRVID SVEGASGAFQ INSFYTNFPE  720
LTSPKLLGTS PFSNSKLSDQ PNQENLSPEG GDFSPQATAS KSPPSSCSQN SSSSQCCSSK  780
TRQHPFSCNV AGNDDPVGDN SRDGVLKRVR SEAGLHDFCQ DRTELLPRSQ SQKILSEQQN  840
LQSIPPSLKN NGRVAQVEVQ RVKVAYGDEK TRFRMQSNWR YEDLVQEIAK RFSIQDMSNF  900
DIKYLDDDSE RVLLTCDDDL EECVDIDGKE GWEEQSDEGM GVGKNNEGMV SPGFSPNVPM  960
RISQIPRSIL PPNRPNHSLL LNSKQKLQHG FQRFGLSVAK PTRSLCTKAV LSEIPNQELY  1020
GKVGANSTGP IPIGQLVGAV EKAAKTGAEF SL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.27051	5e-97	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951313.1	0.0	protein NLP5-like isoform X2
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A498HI36	0.0	A0A498HI36_MALDO; Uncharacterized protein
STRING	XP_009362861.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000584547