PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000424651

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 663aa MW: 74162.2 Da PI: 5.9056

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000424651	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.3	2.5e-07	595	620	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+i++e+l+kyFs+++kdAAk++g MDP0000424651 595 AEKDINFEVLRKYFSGSLKDAAKSIG 620 589*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MSFGTYRLGD NPESEASAMD DGVLSPATML GAQPDSATDL DFMDELFLEG CWLETTYGPE 60 FPNQSLPSTA APLNPSFFWH TLETNGNMAX NTSHNSNQEE MQRPFLKQLV EGPVNXQSPR 120 EDMIKDAVAY SGQSVDPTIE GREFSRRWWI GPTGNEGFAS SVTERLMRAL VNIGEVMRNK 180 DVLVQVWVPV NRGGRRVLTM NELFYLDSSC SRLAKYRDIS ANYQFATGED STEMVMGLPG 240 RVFSGKIPEW TPDVRYFRHD EYPRVGHAQQ YNVSGTLALP IFEQGSRTCL GVIEVVTTDQ 300 KIKYQXDIDS VCKALEQGCD KPFHAALPEI QEVLRSACET HKLPLAQTWM SCIQQGKDGC 360 RHTDDNYVHC VSTVEHACHV ADPCIQSFHE ACSEHHLLRG QGIVGRAFMT NQPCFSDDIT 420 SFVKTEYPLS HHARMFDLHA AVAIRLRSID TGSTDFVLEF FLPVECRDPE EQEKMLTSLS 480 LVMQQTCRSL RVVTDKEVEE ETNFHVSEVI ARSDPGPSNI XCFTXVQQNG KDVSMFPNQK 540 PRKVLSVKLS KLRQHQEDSN LKGGVECGQE FSALGEGSFS SVGVSKTREK RRTKAEKDIN 600 FEVLRKYFSG SLKDAAKSIG ESSISKHKPT SRVPCRYLNI HLAAXQCSLP GLCIYRLTMP 660 TA*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MSFGTYRLGD NPESEASAMD DGVLSPATML GAQPDSATDL DFMDELFLEG CWLETTYGPE  60
FPNQSLPSTA APLNPSFFWH TLETNGNMAX NTSHNSNQEE MQRPFLKQLV EGPVNXQSPR  120
EDMIKDAVAY SGQSVDPTIE GREFSRRWWI GPTGNEGFAS SVTERLMRAL VNIGEVMRNK  180
DVLVQVWVPV NRGGRRVLTM NELFYLDSSC SRLAKYRDIS ANYQFATGED STEMVMGLPG  240
RVFSGKIPEW TPDVRYFRHD EYPRVGHAQQ YNVSGTLALP IFEQGSRTCL GVIEVVTTDQ  300
KIKYQXDIDS VCKALEQGCD KPFHAALPEI QEVLRSACET HKLPLAQTWM SCIQQGKDGC  360
RHTDDNYVHC VSTVEHACHV ADPCIQSFHE ACSEHHLLRG QGIVGRAFMT NQPCFSDDIT  420
SFVKTEYPLS HHARMFDLHA AVAIRLRSID TGSTDFVLEF FLPVECRDPE EQEKMLTSLS  480
LVMQQTCRSL RVVTDKEVEE ETNFHVSEVI ARSDPGPSNI XCFTXVQQNG KDVSMFPNQK  540
PRKVLSVKLS KLRQHQEDSN LKGGVECGQE FSALGEGSFS SVGVSKTREK RRTKAEKDIN  600
FEVLRKYFSG SLKDAAKSIG ESSISKHKPT SRVPCRYLNI HLAAXQCSLP GLCIYRLTMP  660
TA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028960189.1	0.0	protein NLP5-like
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A498JMM3	0.0	A0A498JMM3_MALDO; Uncharacterized protein
STRING	XP_008373422.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000424651