PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320656
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 952aa    MW: 107199 Da    PI: 8.5767
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320656genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1130.27.6e-417415635117
           CG-1  35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                    + gsl L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+ ++fqrr+yw+L+++l++ivlvhy++v
  MDP0000320656  74 SGGSLYLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLQCYYAHGEDYANFQRRSYWMLDTHLQHIVLVHYRNV 156
                    579******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.18215162IPR005559CG-1 DNA-binding domain
SMARTSM010767.0E-5918157IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-3475156IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.201.2E-9112129IPR020683Ankyrin repeat-containing domain
SuperFamilySSF812964.02E-14409488IPR014756Immunoglobulin E-set
CDDcd001021.07E-4413488No hitNo description
PfamPF018331.1E-4413487IPR002909IPT domain
Gene3DG3DSA:2.60.40.104.0E-5413476IPR013783Immunoglobulin-like fold
SuperFamilySSF484031.52E-9592685IPR020683Ankyrin repeat-containing domain
CDDcd002041.42E-7595682No hitNo description
Gene3DG3DSA:1.25.40.201.2E-9595685IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.577601647IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525402.66E-8730847IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37796818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.425797826IPR000048IQ motif, EF-hand binding site
PfamPF006120.0064799817IPR000048IQ motif, EF-hand binding site
SMARTSM000151.4E-4819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.798820844IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-5822841IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MADTRRCLPN QHLDLSQILQ ESKNRGLRPA EICEMLRNYQ NFELTTDPPV RPPDGSLTFL  60
LGICKRKLSD VHFSGGSLYL FDRKALRYFR KDGHRWRKKK DGKTVKEAHE KLKAGSVDVL  120
QCYYAHGEDY ANFQRRSYWM LDTHLQHIVL VHYRNVEEAN SAARMFQTSF DSSPVQTSFA  180
SSPIQTSFAS SPVRTSFASS PNRVDLSGQT LSTEFEDVGS RRDAGISSIE QPMLGSIFHN  240
ASLRPQKIGG FPESFRDPSS TWYGGPKFDH GDGLSVWHGM DSSTRNEHSM HAQNFFVEEP  300
NGVDLITNKL TNSRVDVRSG VNDVTCEDRL TTNIDVQIVS APSRREDQVP REHVFDVLHP  360
QSERIIEMVV RNVELKKLDS FGRWMDKEIG VDCDDSLMAS DSGNYWSTFD AESGDKEVLI  420
VGSFLGSKKD SADTNWGCMF GEIEVSAEIL SNNAIRCQTP LHAPGRVPFY VTGRNRLACS  480
EIREFEYRKK PFGIAINNLQ DDELHFQIRL AKLLSLGSKR KWLICAVPDC DKCKLKSSIF  540
SMQGNSESDW VTIDGASVSC KSDHLSRRDV LIQNLLKDRL CEWLVCKIHG GGKGPHVLDN  600
EGQGVLHLTA ALGYKWAIGP IIAAGVSPNF RDARGRTGLH WASYFGRCHS RSRRGPNVDI  660
SGGPTAADLA SSRGHKGIAG YLAEADLTSH LELLTMNENI MSNVTATIAA ENANQTAEVP  720
ASAPVDEQYS LKNPIAAVRK SAHAAALIQE AFQARSFRQR QLTKSRTDVS EVRSEDLVAR  780
HSLKRVQKFA HYEDYLHVAA ALKIQQNYRG WKGRKDYLKI RDRIVKIQAH VRGHQVRKNY  840
KKVLWSVGIL EKPTEDASSE VKKYDDYEFL SVSRKQKFAG VEKALARVQF MARQPEAREQ  900
YMRLISNFEK LEMTDGKNQA SYQNESSNQQ VIDEILRSLN EGQRSTSTMS SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4534655e-32AM453465.2 Vitis vinifera contig VV78X089070.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349220.20.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_018501401.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_018501402.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A498I8I60.0A0A498I8I6_MALDO; Uncharacterized protein
STRINGXP_009349220.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-113Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains