PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000308350
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 642aa    MW: 71682.9 Da    PI: 5.499
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000308350genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1152.21.2e-47251413118
           CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                    +e k+rwl+++ei+++L n +  ++++e++  p+sgs++L+++k+ ryf kDGy wkk kdg +++E+he+LKvggv++l+cyYah+ee++ fqrr
  MDP0000308350  25 SEgKHRWLRPHEICEVLRNPNGITISKEPTIMPPSGSIFLFDKKVQRYFXKDGYRWKKAKDGXSTKEAHERLKVGGVDTLHCYYAHGEEDKXFQRR 120
                    4559******************************************************************************************** PP

           CG-1  98 cywlLeeelekivlvhylevk 118
                    +yw++++ l++ivlvhyl+vk
  MDP0000308350 121 SYWMIDKYLSHIVLVHYLDVK 141
                    ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143766.0820146IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-6223141IPR005559CG-1 DNA-binding domain
PfamPF038594.0E-4328140IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MDESNRDLHQ SESRILQLNT SRILSEGKHR WLRPHEICEV LRNPNGITIS KEPTIMPPSG  60
SIFLFDKKVQ RYFXKDGYRW KKAKDGXSTK EAHERLKVGG VDTLHCYYAH GEEDKXFQRR  120
SYWMIDKYLS HIVLVHYLDV KGDTMXVGYI KETQTAEVVQ HSRKTXKITP NSEMDCSAAL  180
SCSNNGVSCT CNAILCLIQT EEAVSYLHEA QETGLWIRMV EDAXITLFSS NSSNLGDDET  240
GKSKAKNEEE GGNDINQVRK RPRVTCGQQV DSATQSHSWL EWIYPMAIDT AITDGATNDA  300
TALSQAQEDD ETTRLAAFHI ADPTVAAISA IGPTHLNPYT TANVADQAQD LLPPVLQPTA  360
TTGVVISATT NETAASKSSN XALVQSEPNS NANQDLAQDI IESQEKERYV HNFLQFDDPW  420
VLSSLKSHEF AEVRVISSLK RLHELLGQAS APNPVASSSI STPTIDSQAM AKTRATLEMD  480
FITMAGEVQR AHMISGIQSL VDSNCFPTGT GPMIMAMLKQ LEQSVPVYSK AYSEYDMGKN  540
LTVRVEAMKQ LLQPKVQSCD SKEREFQDLA KWKMXIEAKQ AAILAEIDGI VKETETMQAQ  600
LKKLLLQQDQ FKEDEGYLKA ILDNGDGLWT KFKNIIHQHL PM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946577.10.0uncharacterized protein LOC103438987
TrEMBLA0A498ID680.0A0A498ID68_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.27e-54Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains