PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000300503
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 584aa    MW: 65483.5 Da    PI: 6.5084
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000300503genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-085035411854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  MDP0000300503 503 MFQNflHPYPKDSEKHVLAVKSGLTRNQVSNWFINARVR 541
                    5787779******************************88 PP
2BELL45.61.8e-153894461371
           BELL  13 lslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                    l  l ++d+ Y+q+v++++tv+s+F+a+++ ++ ++++++ l++iS  + +L+++++ +
  MDP0000300503 389 LFXLMQLDDCYNQCVDEIHTVVSAFHAATETDP-HIHARFVLQTISVLYNSLRERVSTH 446
                    4557789**************************.*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-7294445IPR006563POX domain
PfamPF075266.4E-16299443IPR006563POX domain
PROSITE profilePS5007111.013482545IPR001356Homeobox domain
CDDcd000865.45E-10485546No hitNo description
SMARTSM003892.6E-5485549IPR001356Homeobox domain
SuperFamilySSF466895.99E-15487554IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-25488551IPR009057Homeodomain-like
PfamPF059201.8E-14502541IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDNEMYNVPA XSRNSLVMDG VVPHTTVNSL VQSYSFDLNH QNRMMALPPV LSTFHGEPVV  60
DSHSDLNNAN CVSVAESSPF LISQRGSNVR ESSFVSSSFA DNTVFQATPH SSASLAALFA  120
ARGSTILQEN LNNLAISAMP INSSXAYVLN DCSNNSNSPL AASVNCGYDE MLGSVNRQWE  180
INKYAAPLEL GDGSSVRIGL QTYSSVGNVD PNGWLSSDGA SVMTYNSSNS SKFSNELALT  240
LATXRPLEIR NQCSDVGSSG IAQPCLNQXR FASPEQYSSN SEEFSLNYGS CKPPQLSQVI  300
CGSKYLHVVQ EMLSDIANYS LENLDQSSFS SARLVSERGM SXMDDDLDGR FEVPKEPALR  360
KQEIKNKENQ IAGPFTDEIV FGHXNRLILF XLMQLDDCYN QCVDEIHTVV SAFHAATETD  420
PHIHARFVLQ TISVLYNSLR ERVSTHFLLI SENSSPASPN ESERSFEFHK QLALQQLKKK  480
EHQIWRPQRG LPERSVSVLR AWMFQNFLHP YPKDSEKHVL AVKSGLTRNQ VSNWFINARV  540
RLWKPMIEEM YSEMNRRKTR QNENLERTHR SHHIRINNHK FGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-14491549563Homeobox protein Meis2
4xrm_B2e-14491549563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017184844.20.0homeobox protein ATH1-like
TrEMBLA0A498HTP90.0A0A498HTP9_MALDO; Uncharacterized protein
STRINGXP_009365449.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.17e-83homeobox gene 1