PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000262032

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 339aa MW: 38010.6 Da PI: 8.7992

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000262032	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.5	9e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk +++ + MDP0000262032 14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKVITT-E 107 79**************************.89***********7777799*********************************99.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg+kk Lvfy g+apkg+kt+W+mheyrl MDP0000262032 108 GRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-66	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.981	14	162	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDEWVLCRIY KKSSSSAAAA AAAAQKPVTS 180 VSSKEHSNGS SSSCSSQLDD VLEWLPDIDD RNFTLPRINS LKTLLQQQED SKINFQNTGS 240 GNFDWATLAG LNSAPELNLN NQTQQGQGQM NFNFNNNDVP PFNPTSLPRG MAAGEFGKTA 300 EEEVQSGLRT QRVDNSNFFQ QHSQNVCYPV RPSGFGHWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-111	1	166	4	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-111	1	166	4	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-111	1	166	4	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-111	1	166	4	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-111	1	166	7	172	NAC domain-containing protein 19
3swm_B	1e-111	1	166	7	172	NAC domain-containing protein 19
3swm_C	1e-111	1	166	7	172	NAC domain-containing protein 19
3swm_D	1e-111	1	166	7	172	NAC domain-containing protein 19
3swp_A	1e-111	1	166	7	172	NAC domain-containing protein 19
3swp_B	1e-111	1	166	7	172	NAC domain-containing protein 19
3swp_C	1e-111	1	166	7	172	NAC domain-containing protein 19
3swp_D	1e-111	1	166	7	172	NAC domain-containing protein 19
4dul_A	1e-111	1	166	4	169	NAC domain-containing protein 19
4dul_B	1e-111	1	166	4	169	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7916	0.0	fruit\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198117	0.0	KF198117.1 Malus hupehensis NAC domain protein (NAC33) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008345087.2	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-139	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A498KB81	0.0	A0A498KB81_MALDO; Uncharacterized protein
STRING	XP_008345087.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4429	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-125	NAC family protein

Link Out ? help Back to Top
Phytozome	MDP0000262032

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]