PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256917
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family STAT
Protein Properties Length: 1116aa    MW: 121961 Da    PI: 6.7451
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256917genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT167.52.5e-522213491122
           STAT   1 ldvvllnalgqpvekdve.......vvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfei 89 
                    ldvvll+a+++p ++++e       v+asL+yad+g++vek++d eapLL+s dG ef+ +drp+k l+G+asfklkisqLsskcdnr+fr++f+i
  MDP0000256917 221 LDVVLLDAFSHPSNQELEltlvlfkVIASLVYADNGEPVEKTSDGEAPLLASHDGFEFAFSDRPSKTLKGHASFKLKISQLSSKCDNRMFRVMFHI 316
                    8**************975333333389********************************************************************* PP

           STAT  90 pklkkypfleavskpirCisrsrntrsssltkk 122
                    pkl+kypfl+a++ pirCisrsr+tr s++++k
  MDP0000256917 317 PKLEKYPFLKAFTPPIRCISRSRTTRISTTAWK 349
                    **************************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498995.38E-825168IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2007.3E-426140IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.1E-7610704IPR000980SH2 domain
SuperFamilySSF555507.9E-8612682IPR000980SH2 domain
PROSITE profilePS5000110.004618703IPR000980SH2 domain
Gene3DG3DSA:3.40.1190.203.4E-878091114IPR029056Ribokinase-like
HamapMF_0198724.0448091112IPR011877Ribokinase
SuperFamilySSF536134.05E-778101113IPR029056Ribokinase-like
CDDcd011743.03E-1118101104No hitNo description
PfamPF002941.7E-618111105IPR011611Carbohydrate kinase PfkB
PRINTSPR009901.5E-22813834IPR002139Ribokinase/fructokinase
PRINTSPR009901.5E-22840859IPR002139Ribokinase/fructokinase
PROSITE patternPS005830845869IPR002173Carbohydrate/puine kinase, PfkB, conserved site
PRINTSPR009901.5E-22912925IPR002139Ribokinase/fructokinase
PRINTSPR009901.5E-22982997IPR002139Ribokinase/fructokinase
PRINTSPR009901.5E-2210261037IPR002139Ribokinase/fructokinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006014Biological ProcessD-ribose metabolic process
GO:0004747Molecular Functionribokinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    Send to blast
MADEAKEREE YSLLKDFRAE IEPKDGAFSL CFWLYLTSSA ASPATLIQGQ SGATGSAPFL  60
VLSEKKKMVL LPLGILHKEA PETCDLSSLS EDSYVSTENE FPMEKWIHVG CEVLSDTLRL  120
HIDGEAVGNK SMSSLFNKDS ISSGLTKIIL VSGGGEDNSL QGYICNHKVL PLTSSILENY  180
AKDPPLKLSI DNSSASEIEV DSDGVWSIVG GKASCRRIFS LDVVLLDAFS HPSNQELELT  240
LVLFKVIASL VYADNGEPVE KTSDGEAPLL ASHDGFEFAF SDRPSKTLKG HASFKLKISQ  300
LSSKCDNRMF RVMFHIPKLE KYPFLKAFTP PIRCISRSRT TRISTTAWKR PASASDPVNL  360
SQLSGLGDET LELQHSSVNE EKPSPSSKRC RLGQDRIRAT VSALEQPDDE CNSHARTAKQ  420
VEALAKNVVG RPDSVEEIDD SRTDSERPEA RNPDLMSTSS STNPISDATI FKYCLAGLSE  480
KTLLLKEIAS TASNEXILSF SHQVSLYSGC SHHRHQVEMA KRLVEEGTKA WNSISQNNRQ  540
VPWESAVFEI EEQFMKIACC NSRSLTQQDF ELLGRIAGCR EHLAKENFEK LWCWLYPVAF  600
TLSRGGINTM WSSTSPKWIE GFITKEEAET SLQGSRGFQE PGTFVLRFPT SRSWPHPDAG  660
SLVVTYVGSK HTIHHRLISL DHMFRLDGKQ ESSQMSTISH VFKKLHLGDT IPRRQATQDR  720
KSSFQRPNSE CVPNRRERQR AMSAIRAAVF SPSNQWHEKI QTHFPTHPNR SINNANPNLQ  780
SNRRNPFPCF SVDASKSPNP ATPLTATTPP LVVVGSANAD IYVEIDRLPK EGETISAKSG  840
QTLAGGKGAN QAACGGKLSY PTYFVGQVGE DAHGKLITEA LKSGGVCLDR LSAVSGAPTG  900
HAVVMLQSDG QNSIIIVGGS NMECWPERIS DEDLEVVRNA GIVLLQREIP XSVNVQVAKA  960
AKSAGVPVIL DAGGMDTPIS RELLNFVDIL SPNETELGRL TGMPTESFEQ ISNAVVKLHK  1020
MGVKQVLVKL GDKGSALFVD GEEPLKQPVI PAAKVLDTTG AGDTFTASFA VALVEGKSKR  1080
ECLRFAAAAA SLCVQVKGAI PSMPERKSVL NLLQSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ilr_A1e-17080911143310Ribokinase
6ilr_B1e-17080911143310Ribokinase
6ils_A1e-17080911143310Ribokinase
6ils_B1e-17080911143310Ribokinase
6ilt_A1e-17080911143310Ribokinase
6ilt_B1e-17080911143310Ribokinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.11430.0fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944969.10.0SH2 domain-containing protein B-like
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A498IPG00.0A0A498IPG0_MALDO; Uncharacterized protein
STRINGXP_008366521.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]