PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000255517
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 1122aa    MW: 125262 Da    PI: 5.8224
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000255517genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1144.43e-457417418118
           CG-1  18 LenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvh 113
                    ++ f++ +++ ++ +  + gsl L++rk++ryfrkDG++w+kk+dgktv+E+hekLKvg+v+vl+cyYah+e++++fqrrcywlLe++l +iv+vh
  MDP0000255517  74 VVVFTHRTFWCATFSAMPGGSLYLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHCYYAHGEDDENFQRRCYWLLEQDLMHIVFVH 169
                    3445556678888889999***************************************************************************** PP

           CG-1 114 ylevk 118
                    yl+vk
  MDP0000255517 170 YLQVK 174
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.28315179IPR005559CG-1 DNA-binding domain
SMARTSM010767.1E-6518174IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-52159IPR005559CG-1 DNA-binding domain
PfamPF038597.7E-3791172IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.8E-5520609IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.22E-16523608IPR014756Immunoglobulin E-set
SuperFamilySSF484033.58E-14700825IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-15708829IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.743709835IPR020683Ankyrin repeat-containing domain
CDDcd002041.50E-10709823No hitNo description
SuperFamilySSF525404.51E-8935989IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.1938960IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078939968IPR000048IQ motif, EF-hand binding site
PfamPF006120.0047941959IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071961983IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212962986IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4964983IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MAERGSDAQG RRLDFRQLLV EAQHRWLRPA EICEILSNFH KFHISPEPPN KPXSTANSLA  60
LSVHKTWLRV VVSVVVFTHR TFWCATFSAM PGGSLYLFDR KVLRYFRKDG HNWRKKRDGK  120
TVKEAHEKLK VGSVDVLHCY YAHGEDDENF QRRCYWLLEQ DLMHIVFVHY LQVKGNRANV  180
GGIIENDEVT PDLKRGSPWT SSPSNSNGRT PSGYTDHASP SSTSTSACED VDSGDSRQAS  240
SLFHSVFESP KMGNGPLMDN AEIDPSLHPS SNNHDGQSSI HGVYRPQFEN DQHCFSADST  300
GVIDCQKTLG AVSWEEILEQ CTTGFHTGTS HASMSTTQIG SGEVPVEQQI LGNSFLKEEF  360
GSXMPFQTNW QLPLGDNSLQ LPECSLDQST NLQRTLDANL RNTPDLVSAH LNQRNEQLVQ  420
DDLQAQLTNA ESECLIISSS EHDVPKDGNV NYAFTLRQQL LDREDGLKKV DSFSRWVSKE  480
LEEVDDLQMQ SSSGIPWSTA EYGDVVDDSS LSPSVSQDQL FSIVDFSPKW AYTDSEIEVL  540
VFGTFLVSQK EVTKYSWSCM FGEVEVPAQV LASGVLFCFA PPHSAGQVPF YVTCSNRLAC  600
SEVREFNYQV GSTKGFDMTD IGDGAAHEMH LHLRLESLLS LRPLSPSGQP FGGVKENRNL  660
ISKIISLQEE EDYLAEPTVV NYLLQNEGME HLIKLMKEKL YTWLLYKAIE DGKGPSVLDA  720
EGQGVLHLAA ALGYDWAIKP TVTAGVSINF RDVNGWTALH WAAFCGRQGH QNPFHFILHT  780
VAVLVSLGAD PGALTDPSPE VPLGRTPADL ASVSSHKGIS GFLAESSLTT YLKSLTMNDA  840
KEDGAAEISG TKVVKTFSER IATPVSYGDM PDALSLKDSL TAITNATQAA DRIQQMLRMQ  900
SFERRXLTEY DSDEFGMPDE RAISFITSKS HKGPINRNAH TAAVQIQKKF RGWKKRKEFL  960
IIRQRIVKIQ AHVRGHQVRK QYKAITWSVG ILEKVILRWR RKGTGLRGFR PDAVAKIPDP  1020
QTVASSEDDY DFLKKGRKQT EERLQKALTR VKSMVQYLEG RAQYRRLLNV VEGFGETKVN  1080
DMAVEVSEEK AEGGDEKAEG GDDLIDIDKL LDDDTFMSIA FD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.96431e-141bud| cell culture| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358353.20.0calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A498J0550.0A0A498J055_MALDO; Uncharacterized protein
STRINGXP_008358353.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]