PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000252573

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 373aa MW: 42254.9 Da PI: 4.5299

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000252573	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.5	8.7e-26	285	335	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+dl+ yF+lpi++AA+ L+vc+Tv+KriCR++G++RWP+Rki+s+ MDP0000252573 285 TANMTLDDLRGYFHLPIQKAARRLKVCPTVVKRICRRNGLNRWPSRKIRSI 335 789**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	275	355	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-23	287	335	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MADPRAVVPY HDPYENGLCS DIINFLYDSE HPXLDENVPL PPLDXEGLTC PTNPISLFDE 60 GIQDLDDPLL DQATWDFLNQ CSNGGGNVDS QAGPSHIIGE SSGTSPPRGD NIEQNQXFGD 120 PVPLSVWPAI PVPFNCSCCQ LLREIIHSNG NHVMKFDIHG RFGMISHAIL HSFDMKSSDN 180 HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYLMQQDPMA IFYEALCVGL EWDDILNTDD 240 FTFPXSPLNS GRAGEVEQQQ XAADQXEAAE DENERISLAA QRERTANMTL DDLRGYFHLP 300 IQKAARRLKV CPTVVKRICR RNGLNRWPSR KIRSINRQIS RLTPSLESDD ANTRVHAEAE 360 ISRLEREIVE LVP

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MADPRAVVPY HDPYENGLCS DIINFLYDSE HPXLDENVPL PPLDXEGLTC PTNPISLFDE  60
GIQDLDDPLL DQATWDFLNQ CSNGGGNVDS QAGPSHIIGE SSGTSPPRGD NIEQNQXFGD  120
PVPLSVWPAI PVPFNCSCCQ LLREIIHSNG NHVMKFDIHG RFGMISHAIL HSFDMKSSDN  180
HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYLMQQDPMA IFYEALCVGL EWDDILNTDD  240
FTFPXSPLNS GRAGEVEQQQ XAADQXEAAE DENERISLAA QRERTANMTL DDLRGYFHLP  300
IQKAARRLKV CPTVVKRICR RNGLNRWPSR KIRSINRQIS RLTPSLESDD ANTRVHAEAE  360
ISRLEREIVE LVP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021824360.1	1e-180	uncharacterized protein LOC110765523
TrEMBL	A0A498JCN8	0.0	A0A498JCN8_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-15	NIN like protein 7

Link Out ? help Back to Top
Phytozome	MDP0000252573