PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000239938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Nin-like | ||||||||
Protein Properties | Length: 1329aa MW: 147273 Da PI: 5.5571 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.2 | 3.7e-29 | 598 | 649 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ MDP0000239938 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.359 | 583 | 669 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.7E-26 | 601 | 649 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.55E-21 | 878 | 965 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.1E-23 | 878 | 960 | No hit | No description |
SMART | SM00666 | 2.8E-22 | 881 | 963 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 21.19 | 881 | 963 | IPR000270 | PB1 domain |
CDD | cd06407 | 6.56E-32 | 882 | 962 | No hit | No description |
Pfam | PF00564 | 3.4E-17 | 884 | 961 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.30.70.330 | 4.3E-18 | 1041 | 1074 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 11.264 | 1047 | 1173 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 4.0E-6 | 1048 | 1169 | IPR000504 | RNA recognition motif domain |
SuperFamily | SSF54928 | 1.3E-10 | 1116 | 1172 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Pfam | PF00076 | 2.1E-6 | 1124 | 1166 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 4.3E-18 | 1125 | 1173 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF57756 | 2.91E-11 | 1208 | 1254 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 2.9E-4 | 1216 | 1232 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 1.1E-5 | 1216 | 1231 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 10.147 | 1216 | 1231 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 7.6E-12 | 1216 | 1254 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 2.2E-4 | 1237 | 1254 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 10.658 | 1238 | 1254 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 7.1E-4 | 1238 | 1254 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1329 aa Download sequence Send to blast |
MDYHXSPKDK GNDHWAXARA QVENLASFDD GTGNPISEDM FNNISELMNF DTYAGWCSPA 60 ATDQIAASLG MPSCPSVTYT PLDALNFVGH NGEQLPGTSG AGTFNVGGSF NCGXKIVFEH 120 VGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYMI YRPPGLSLNE KMLKALSMFK 180 ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL 240 PGRVFVSKTP EWTSNVNXYN KTEYLRVDYA ANHQVRGSIA LPIFDFDXES SCCAVLELVS 300 TKEKSNFDTE MEIVCSALRA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRVICHAHLL 360 PLAMTWIPCC YSEGDDDGIK RVRVKGGFAN SDEKCILCIE ETACYVNDRR MQGFVHACAE 420 HHLEEGEGIA GKALQSNHPF FINDVKAYNI YEYPLVHHAR KYGLNAAVAI RLRSTYTGDD 480 DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICXSLRTVS DAELVGLGSA NTGFQKETSP 540 NIPQRNFQXT LSDSEMNSAE NVTFNVFNQR NGGIERDNPP KQAPSGSTRQ AEKKRSTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KYDPTTGGFV TTGSIIQEVD APKNLLFPEK NLLVENSEPV ARHPISMPSY 720 NTGESLTVKL EEDGSCVPTS HEKEVKTQSI PFMPQGDSKP IAMDFGSCDP TNHGITPDSK 780 GSYLAKEVNK WGHIQNSLRL DNSDCHFVSQ NSSSLVAADE MDMGVHGDDG IVEYNQHSSS 840 SLTDSSNDFG STMQGYSSST QSFEEQKHPQ VETSTGENGS KIIVKATYKE DTIRFKFEPS 900 LGCLQLYEEV AKRLKLQNGT FQLKYLDDEE EWVMLVSDAD LQECLEILDD IGKRCAKFMV 960 RDIPSGVGSS GSSNFLGILG HNVLVKYSSL LSPPPMEFML ADVGIAMGHF SGTEDWDVRW 1020 TGNCRHIRYL AYTCLTMPRY DDRYGNTRLY VGRLSSRTRS RDLERLFNRY GSLCVGAFSP 1080 KCFLNLNDLV EGFLGLVALL GGLWWEGDLG GIGGNFAECG LGGKSCRVVR DVDMKREFAF 1140 VDFSDPRDAD DARYSLDGRE FDGSRLIVEF CKRVFQVCVC VHLLYQTDSF FFVTLGKAPR 1200 GSREYLGRGP TPGSGRCFNC GIDGHWARDC KAGDWKNKCY RCGERGHIER QCKNIAGGVA 1260 HQLDHVLAVE EAVAQVTAEA AAIGQYALDP DNVYEEFYDN RACAIFNFDM VICQHPTHLT 1320 VVIWTFVVS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.21650 | 3e-65 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028945382.1 | 0.0 | protein NLP9-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A498ICB4 | 0.0 | A0A498ICB4_MALDO; Uncharacterized protein | ||||
STRING | XP_008366708.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000239938 |
Publications ? help Back to Top | |||
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