PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000239938

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 1329aa MW: 147273 Da PI: 5.5571

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000239938	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.7e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ MDP0000239938 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.359	583	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.55E-21	878	965	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.1E-23	878	960	No hit	No description
SMART	SM00666	2.8E-22	881	963	IPR000270	PB1 domain
PROSITE profile	PS51745	21.19	881	963	IPR000270	PB1 domain
CDD	cd06407	6.56E-32	882	962	No hit	No description
Pfam	PF00564	3.4E-17	884	961	IPR000270	PB1 domain
Gene3D	G3DSA:3.30.70.330	4.3E-18	1041	1074	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	11.264	1047	1173	IPR000504	RNA recognition motif domain
SMART	SM00360	4.0E-6	1048	1169	IPR000504	RNA recognition motif domain
SuperFamily	SSF54928	1.3E-10	1116	1172	IPR012677	Nucleotide-binding alpha-beta plait domain
Pfam	PF00076	2.1E-6	1124	1166	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	4.3E-18	1125	1173	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF57756	2.91E-11	1208	1254	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	2.9E-4	1216	1232	IPR001878	Zinc finger, CCHC-type
Pfam	PF00098	1.1E-5	1216	1231	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	10.147	1216	1231	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	7.6E-12	1216	1254	IPR001878	Zinc finger, CCHC-type
Pfam	PF00098	2.2E-4	1237	1254	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	10.658	1238	1254	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	7.1E-4	1238	1254	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1329 aa Download sequence Send to blast
MDYHXSPKDK GNDHWAXARA QVENLASFDD GTGNPISEDM FNNISELMNF DTYAGWCSPA 60 ATDQIAASLG MPSCPSVTYT PLDALNFVGH NGEQLPGTSG AGTFNVGGSF NCGXKIVFEH 120 VGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYMI YRPPGLSLNE KMLKALSMFK 180 ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL 240 PGRVFVSKTP EWTSNVNXYN KTEYLRVDYA ANHQVRGSIA LPIFDFDXES SCCAVLELVS 300 TKEKSNFDTE MEIVCSALRA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRVICHAHLL 360 PLAMTWIPCC YSEGDDDGIK RVRVKGGFAN SDEKCILCIE ETACYVNDRR MQGFVHACAE 420 HHLEEGEGIA GKALQSNHPF FINDVKAYNI YEYPLVHHAR KYGLNAAVAI RLRSTYTGDD 480 DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICXSLRTVS DAELVGLGSA NTGFQKETSP 540 NIPQRNFQXT LSDSEMNSAE NVTFNVFNQR NGGIERDNPP KQAPSGSTRQ AEKKRSTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KYDPTTGGFV TTGSIIQEVD APKNLLFPEK NLLVENSEPV ARHPISMPSY 720 NTGESLTVKL EEDGSCVPTS HEKEVKTQSI PFMPQGDSKP IAMDFGSCDP TNHGITPDSK 780 GSYLAKEVNK WGHIQNSLRL DNSDCHFVSQ NSSSLVAADE MDMGVHGDDG IVEYNQHSSS 840 SLTDSSNDFG STMQGYSSST QSFEEQKHPQ VETSTGENGS KIIVKATYKE DTIRFKFEPS 900 LGCLQLYEEV AKRLKLQNGT FQLKYLDDEE EWVMLVSDAD LQECLEILDD IGKRCAKFMV 960 RDIPSGVGSS GSSNFLGILG HNVLVKYSSL LSPPPMEFML ADVGIAMGHF SGTEDWDVRW 1020 TGNCRHIRYL AYTCLTMPRY DDRYGNTRLY VGRLSSRTRS RDLERLFNRY GSLCVGAFSP 1080 KCFLNLNDLV EGFLGLVALL GGLWWEGDLG GIGGNFAECG LGGKSCRVVR DVDMKREFAF 1140 VDFSDPRDAD DARYSLDGRE FDGSRLIVEF CKRVFQVCVC VHLLYQTDSF FFVTLGKAPR 1200 GSREYLGRGP TPGSGRCFNC GIDGHWARDC KAGDWKNKCY RCGERGHIER QCKNIAGGVA 1260 HQLDHVLAVE EAVAQVTAEA AAIGQYALDP DNVYEEFYDN RACAIFNFDM VICQHPTHLT 1320 VVIWTFVVS

Sequence ? help Back to Top

Protein Sequence Length: 1329 aa Download sequence Send to blast

MDYHXSPKDK GNDHWAXARA QVENLASFDD GTGNPISEDM FNNISELMNF DTYAGWCSPA  60
ATDQIAASLG MPSCPSVTYT PLDALNFVGH NGEQLPGTSG AGTFNVGGSF NCGXKIVFEH  120
VGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYMI YRPPGLSLNE KMLKALSMFK  180
ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL  240
PGRVFVSKTP EWTSNVNXYN KTEYLRVDYA ANHQVRGSIA LPIFDFDXES SCCAVLELVS  300
TKEKSNFDTE MEIVCSALRA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRVICHAHLL  360
PLAMTWIPCC YSEGDDDGIK RVRVKGGFAN SDEKCILCIE ETACYVNDRR MQGFVHACAE  420
HHLEEGEGIA GKALQSNHPF FINDVKAYNI YEYPLVHHAR KYGLNAAVAI RLRSTYTGDD  480
DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICXSLRTVS DAELVGLGSA NTGFQKETSP  540
NIPQRNFQXT LSDSEMNSAE NVTFNVFNQR NGGIERDNPP KQAPSGSTRQ AEKKRSTAEK  600
NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KYDPTTGGFV TTGSIIQEVD APKNLLFPEK NLLVENSEPV ARHPISMPSY  720
NTGESLTVKL EEDGSCVPTS HEKEVKTQSI PFMPQGDSKP IAMDFGSCDP TNHGITPDSK  780
GSYLAKEVNK WGHIQNSLRL DNSDCHFVSQ NSSSLVAADE MDMGVHGDDG IVEYNQHSSS  840
SLTDSSNDFG STMQGYSSST QSFEEQKHPQ VETSTGENGS KIIVKATYKE DTIRFKFEPS  900
LGCLQLYEEV AKRLKLQNGT FQLKYLDDEE EWVMLVSDAD LQECLEILDD IGKRCAKFMV  960
RDIPSGVGSS GSSNFLGILG HNVLVKYSSL LSPPPMEFML ADVGIAMGHF SGTEDWDVRW  1020
TGNCRHIRYL AYTCLTMPRY DDRYGNTRLY VGRLSSRTRS RDLERLFNRY GSLCVGAFSP  1080
KCFLNLNDLV EGFLGLVALL GGLWWEGDLG GIGGNFAECG LGGKSCRVVR DVDMKREFAF  1140
VDFSDPRDAD DARYSLDGRE FDGSRLIVEF CKRVFQVCVC VHLLYQTDSF FFVTLGKAPR  1200
GSREYLGRGP TPGSGRCFNC GIDGHWARDC KAGDWKNKCY RCGERGHIER QCKNIAGGVA  1260
HQLDHVLAVE EAVAQVTAEA AAIGQYALDP DNVYEEFYDN RACAIFNFDM VICQHPTHLT  1320
VVIWTFVVS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.21650	3e-65	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028945382.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A498ICB4	0.0	A0A498ICB4_MALDO; Uncharacterized protein
STRING	XP_008366708.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000239938

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]