PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000239235

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 358aa MW: 40468.9 Da PI: 9.0572

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000239235	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.9e-21	119	178	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ MDP0000239235 119 TRWNPTQEQIGILEMLYREgMRTPNAQQIEKITAQLgkygKIEGKNVFYWFQNHKARERQ 178 7***************99************************************97 PP
2	Wus_type_Homeobox	117.8	4.8e-38	119	180	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq MDP0000239235 119 TRWNPTQEQIGILEMLYREGMRTPNAQQIEKITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 180 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.446	114	179	IPR001356	Homeobox domain
SMART	SM00389	1.6E-8	116	183	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-12	116	184	IPR009057	Homeodomain-like
CDD	cd00086	3.49E-6	119	180	No hit	No description
Pfam	PF00046	8.7E-19	119	178	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-8	120	178	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGMSSMKVHQ FARGLWEHEP SLTLGCTKRL RPLAPRLANT AAASDTTTTL APFDLKSFIR 60 PDSGPRKLGS SNQLQEKKDS PHPQFNKPSR FIRQYKQSDN RTSAYLIYDL KVETHPGGTR 120 WNPTQEQIGI LEMLYREGMR TPNAQQIEKI TAQLGKYGKI EGKNVFYWFQ NHKARERQKQ 180 KRSSLGLSHS PKNTDSCNYH PSGVSSVISV ERGMGRSRLE IYTRSKTFLC NKKGVLGEVV 240 VEREEDNPYK RKCRSWEFDC LVEGDHSSST SSVVCKLDND DAVEGVVSRN VSFHLDXCNS 300 NWEREMPSXA NVKKSSGLAD EGDLGMQAVK SQRCKQPVRR DASTEGTDVD CGRDEDDF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGMSSMKVHQ FARGLWEHEP SLTLGCTKRL RPLAPRLANT AAASDTTTTL APFDLKSFIR  60
PDSGPRKLGS SNQLQEKKDS PHPQFNKPSR FIRQYKQSDN RTSAYLIYDL KVETHPGGTR  120
WNPTQEQIGI LEMLYREGMR TPNAQQIEKI TAQLGKYGKI EGKNVFYWFQ NHKARERQKQ  180
KRSSLGLSHS PKNTDSCNYH PSGVSSVISV ERGMGRSRLE IYTRSKTFLC NKKGVLGEVV  240
VEREEDNPYK RKCRSWEFDC LVEGDHSSST SSVVCKLDND DAVEGVVSRN VSFHLDXCNS  300
NWEREMPSXA NVKKSSGLAD EGDLGMQAVK SQRCKQPVRR DASTEGTDVD CGRDEDDF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.1705	5e-33	bud

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008351991.1	1e-135	WUSCHEL-related homeobox 4-like
TrEMBL	A0A498HTA1	1e-132	A0A498HTA1_MALDO; Uncharacterized protein
STRING	XP_008351991.1	1e-134	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-58	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	MDP0000239235