PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232417
Common NameARF2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 895aa    MW: 99139.5 Da    PI: 6.5671
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232417genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24127228199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  MDP0000232417 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 218
                    99*****************************86555544..8************************************************..8899 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                     +l+++++r+
  MDP0000232417 219 NQLLLGIRRA 228
                    999****997 PP
2Auxin_resp117.98.4e-39253336183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+t+s F+++YnPras+seFv++++k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  MDP0000232417 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                    79*********************************956689****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21126227No hitNo description
PfamPF023625.4E-22127228IPR003340B3 DNA binding domain
SMARTSM010192.3E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52127229IPR003340B3 DNA binding domain
PfamPF065074.5E-34253336IPR010525Auxin response factor
PfamPF023094.4E-7758851IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-7762837No hitNo description
PROSITE profilePS5174524.364762846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MRLSSAGFSP QSQEGEKKVL NSELWHACAG PLVSLPAVGT RVVYFPQGHS EQVAASTNKE  60
VDAHIPNHPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR QQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEVEPLT  360
TFPMYPSPFQ LRLKRPWTPG LPSFNGMRDD DLGMNSQLVW LQGNNGDRGM QSLNFPGMGV  420
TPWMQPRLDA SMIGLQSDXY QAMAAAALQE MRAVDPSRPL PTSLLQFQQP QSLPNSNRSA  480
ALMQPQMVQE SHSQQAFLQG VQENHRQSQP XXQTQSHLLQ QQLQHQNSFS NQQQQQLVDH  540
QHIPSAVSSL TQFASASQSQ SPSLQVVTTL CHQQSFSDSN GNPATSTVIS PLHNLMGSFP  600
QDESSHLLNL PRTNQLISSD GWPSKRAAID PLLSSGVSQC VLPRVEQFGP PHTTMSQNSI  660
SLPPFPGREC SLDQEGGTDP QSHLLFGVNI ESSPLIMQSG MSNLRGVGSD CGSTTMHFPS  720
NYMSTAGSDF SINPAVTPSS CIHESGFLQS SENADNGDPL NRNFVKVYKS GSFGRSLDIT  780
KFSSYQELRN ELAHMFGLEG ELDDPVRSGW QLVFVDREND VLLLGDDPWP EFVNSVWCIK  840
ILSPQEVQQM GKRGLELLKS VPNQRLSNNS CDDYGSRQDS RNLSSGITSV GSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621135741388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110740.0bud| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371797.20.0auxin response factor 6-like isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A498JVF30.0A0A498JVF3_MALDO; Auxin response factor
STRINGXP_008371796.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]