PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232008
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 349aa    MW: 38606.5 Da    PI: 9.1459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232008genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.94.8e-5491361128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat+ gyWk+tgkdke++++ 
  MDP0000232008   9 LPPGFRFHPTDEELITFYLMNKINDATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNIGYWKTTGKDKEIFNSv 103
                    79*************************999.89***************99999****************************************998 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++el g+kktLvfy+grap+gek++Wvmheyr+
  MDP0000232008 104 TSELAGMKKTLVFYRGRAPRGEKSNWVMHEYRI 136
                    9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-626157IPR003441NAC domain
PROSITE profilePS5100559.3519157IPR003441NAC domain
PfamPF023651.2E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTAEPKEELP PGFRFHPTDE ELITFYLMNK INDATFTGRA IADVDLNKCE PWELPAKAKM  60
GEKEWYFFSL RDRKYPTGVR TNRATNIGYW KTTGKDKEIF NSVTSELAGM KKTLVFYRGR  120
APRGEKSNWV MHEYRIHSKS GFRTSKDEWV ICRVFQKSAG IKKYPTNQSR AANPYNLEIG  180
PSMVPSPLMQ LGDPNHHQFP YGRNYMTSAE MAEISRVLRG GGGGGGSSSS TVNLPIQPQF  240
NYPIGGGGGG VGGGGGFTIS GLNLNLGGPA SQPMLRTMPP PHLHHQGPPS MNHHPQVQDV  300
TNTAMMNGPD HQGGYGTIDM NNNNANGGSG NRFMNMEPCV DLDNYWPPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53916317171NO APICAL MERISTEM PROTEIN
1ut4_B6e-53916317171NO APICAL MERISTEM PROTEIN
1ut7_A6e-53916317171NO APICAL MERISTEM PROTEIN
1ut7_B6e-53916317171NO APICAL MERISTEM PROTEIN
3swm_A8e-53916320174NAC domain-containing protein 19
3swm_B8e-53916320174NAC domain-containing protein 19
3swm_C8e-53916320174NAC domain-containing protein 19
3swm_D8e-53916320174NAC domain-containing protein 19
3swp_A8e-53916320174NAC domain-containing protein 19
3swp_B8e-53916320174NAC domain-containing protein 19
3swp_C8e-53916320174NAC domain-containing protein 19
3swp_D8e-53916320174NAC domain-containing protein 19
4dul_A6e-53916317171NAC domain-containing protein 19
4dul_B6e-53916317171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393899.20.0NAC domain-containing protein 92-like isoform X2
TrEMBLA0A498HU040.0A0A498HU04_MALDO; Uncharacterized protein
STRINGXP_008393898.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-106NAC domain containing protein 38