PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000185253
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 1114aa    MW: 123453 Da    PI: 6.8413
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000185253genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.6e-22136237199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++++
  MDP0000185253 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQ 228
                    99*****************************9445444.38************************************************..56888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  MDP0000185253 229 QLLLGIRRA 237
                    89****997 PP
2Auxin_resp116.52.3e-38262345183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+
  MDP0000185253 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKHSQWRNLQ 345
                    79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-43124265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41129251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-18135227No hitNo description
PROSITE profilePS5086311.899136238IPR003340B3 DNA binding domain
SMARTSM010191.9E-22136238IPR003340B3 DNA binding domain
PfamPF023623.1E-20136237IPR003340B3 DNA binding domain
PfamPF065071.0E-33262345IPR010525Auxin response factor
PROSITE profilePS5174526.76510011085IPR000270PB1 domain
PfamPF023096.1E-710011086IPR033389AUX/IAA domain
SuperFamilySSF542774.9E-710141079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MKPPANGAGA SVANCASNSC PGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLLP VSSFDKDALL  120
RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKHSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEDYDMDNL FKRTMPWLGD DMSMKDPQVX  420
PGLSLVQWMN MQQNXSTGNS MQPNYMHSYS GSAIQNLAGA DLSRQLGLSA PQIPQMNNLQ  480
FNGQRPPQQV LDQLPKQPSS LSPLAPMIQR QQQLGDNSQP PRQNXVNQTL PLSQVQSQLL  540
QPQTLAQNNS GVLQQQSSAQ NHLQRNIPQN LQQHQQQQHQ QQIMGQNQQQ SFIQSQPPDQ  600
MNQQLQHLSD NQLQFQLLQK LQQQQQSLLA QQAQQHPAQQ VQLQDQQRQM FDMSQSFSRP  660
SPTQMLDMPQ MAPTAHPQSR TMPQQMTKNS HSQANVRFSQ PPQQPKLQQQ QSGMLPEMSG  720
HMGLPNTTTN QLSTVGSNIM TAVAGAGQSG ITDEVPSCST SPSTNNGPIV IQPLMNNRSH  780
RNSSIGEDMA QSATTILSSG AIDRMPSHGN LMKDFQHKSE VXXSVNIARN QSQGILTPQA  840
YMNSAAAQTD YLDTSSSTTS VGLSQNDVHL QQNNAPLPFH PQSMLFREAS QEVEVLVDQR  900
SNVPYGSNID GQIGIPLNPD PMLAKGVVRL AKDFSNTLSS GGMLGNYENS KDAQVELSTS  960
MVSQSFGVPD MTFNSIDSAI NDSSFLDSGP WAPAPPFQRM RTYTKVYKRG AVGRSIDMTR  1020
YSNYDELKQD LARRFGIEGQ LEDRGRVGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGGNAV LPNQACSSSD GGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682936651388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117321e-137fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391414.20.0auxin response factor 19-like
TrEMBLA0A498I8J50.0A0A498I8J5_MALDO; Auxin response factor
STRINGXP_008391414.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19