PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000132856

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 982aa MW: 107625 Da PI: 5.4622

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000132856	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	582	633	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ MDP0000132856 582 AEKSISLEVLQQYFAGSLKDAAKNLGVCPTTMKRICRHHGISRWPSRKIKKV 633 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.382	572	653	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	586	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.01E-21	881	975	No hit	No description
SMART	SM00666	7.5E-26	889	971	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-24	889	970	No hit	No description
PROSITE profile	PS51745	22.3	889	971	IPR000270	PB1 domain
Pfam	PF00564	2.0E-19	890	970	IPR000270	PB1 domain
CDD	cd06407	1.34E-33	890	970	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MSDPEDDTQA PAIPPKPKNE REAALMDFDL DLDAFWPLDP NHFLSNPTSP LLLPSNDQPC 60 TPLWAFPDGD VDGEDKLAXH VGQDLSDPSQ FVSCNSNSVT QGSTENKDNR LEPVESSDGY 120 SLFKEKITQA LRYLKELTDQ XVLAQVWVPV KDGNRYVLTT SGQPFVLDQH SIGLHQYRMA 180 SLMYMFSVGG ESDGMLGLPG RVFQHKLPEW TPNVQYYSIK EYPRLGHAQH YNVQGTLALP 240 VFEPSGQSCA GVLELIMTSP IINCGPEVDK VCKALEVGAV SLKSSEILDH PSRQIQICNE 300 GRQIALAEIL KILTVVCETY KLPLAQTWVP CMHRSVLAYG GGLKKSCTSV DGSCMEQVCM 360 STTDVAFYII DAHMWRFRDA CVEHHLQKGQ GVAGRAFSSR NACFCGDITQ FCKTEYPLVH 420 YARMFGLASS FAICLQSTHT GNDDYILEFF LPPSIMDXHE QQTLLGSILA IMKNDFRSLS 480 VASGIVLEEE GIVEIVQAST NNGLATRLEC ILIPHSVESP PGPXLPNREE MAQLDSSKPQ 540 LKVVYDVVND GRNSVHEGGX NNISLPENKD IKKRPEKKRG KAEKSISLEV LQQYFAGSLK 600 DAAKNLGVCP TTMKRICRHH GISRWPSRKI KKVNXSLTKL QRVIESVQGA EGAFGLTPLT 660 ASPRPVAAGS ISQPYNLNGS NKQGSPSSKP CEVSGEKKDS TTSTSPGTEG QAGIDNHXLD 720 WRIXSHEELV PEHNRFLRDR GKGSNTSNTG SSSREASAGT PTSHGSCQGS PGNGIAVVNY 780 PFVPFXHEQC IEVNGSPQSA VRTPEESNLL VACSIPDALL MAEPEEPCRG MLLEDAGSSK 840 DLRNLCPLAD TIMDEQVREA CNTNPPFSDS APKQSNTMPD IMGRQEMKSV TIKATYKEDI 900 IRFRVSMSSG IVELKEAVAK RLKLEVGTFD IKYVDDDLER VLVACDADLQ ECMEVCRTSG 960 SNMIRLSVHD IMSHLGSSCG SA

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MSDPEDDTQA PAIPPKPKNE REAALMDFDL DLDAFWPLDP NHFLSNPTSP LLLPSNDQPC  60
TPLWAFPDGD VDGEDKLAXH VGQDLSDPSQ FVSCNSNSVT QGSTENKDNR LEPVESSDGY  120
SLFKEKITQA LRYLKELTDQ XVLAQVWVPV KDGNRYVLTT SGQPFVLDQH SIGLHQYRMA  180
SLMYMFSVGG ESDGMLGLPG RVFQHKLPEW TPNVQYYSIK EYPRLGHAQH YNVQGTLALP  240
VFEPSGQSCA GVLELIMTSP IINCGPEVDK VCKALEVGAV SLKSSEILDH PSRQIQICNE  300
GRQIALAEIL KILTVVCETY KLPLAQTWVP CMHRSVLAYG GGLKKSCTSV DGSCMEQVCM  360
STTDVAFYII DAHMWRFRDA CVEHHLQKGQ GVAGRAFSSR NACFCGDITQ FCKTEYPLVH  420
YARMFGLASS FAICLQSTHT GNDDYILEFF LPPSIMDXHE QQTLLGSILA IMKNDFRSLS  480
VASGIVLEEE GIVEIVQAST NNGLATRLEC ILIPHSVESP PGPXLPNREE MAQLDSSKPQ  540
LKVVYDVVND GRNSVHEGGX NNISLPENKD IKKRPEKKRG KAEKSISLEV LQQYFAGSLK  600
DAAKNLGVCP TTMKRICRHH GISRWPSRKI KKVNXSLTKL QRVIESVQGA EGAFGLTPLT  660
ASPRPVAAGS ISQPYNLNGS NKQGSPSSKP CEVSGEKKDS TTSTSPGTEG QAGIDNHXLD  720
WRIXSHEELV PEHNRFLRDR GKGSNTSNTG SSSREASAGT PTSHGSCQGS PGNGIAVVNY  780
PFVPFXHEQC IEVNGSPQSA VRTPEESNLL VACSIPDALL MAEPEEPCRG MLLEDAGSSK  840
DLRNLCPLAD TIMDEQVREA CNTNPPFSDS APKQSNTMPD IMGRQEMKSV TIKATYKEDI  900
IRFRVSMSSG IVELKEAVAK RLKLEVGTFD IKYVDDDLER VLVACDADLQ ECMEVCRTSG  960
SNMIRLSVHD IMSHLGSSCG SA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16737	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008337558.2	0.0	protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A498JL49	0.0	A0A498JL49_MALDO; Uncharacterized protein
STRING	XP_008337558.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	MDP0000132856

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]