PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129092
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 607aa    MW: 67726.7 Da    PI: 7.0292
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129092genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA33.27.3e-113864935
           GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                   TplWR+gp+ ++ LCnaCG ++  kg+
  MDP0000129092 38 TPLWRNGPSDKPVLCNACGSRWXTKGT 64
                   9*******88888*********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00243178IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-63769No hitNo description
PfamPF003203.1E-83864IPR000679Zinc finger, GATA-type
CDDcd002028.19E-103877No hitNo description
Gene3DG3DSA:3.30.50.105.7E-83864IPR013088Zinc finger, NHR/GATA-type
PfamPF139197.6E-11308400IPR028020ASX homology domain
PfamPF165504.3E-10323399IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSDFVYLLIA LEVPLIPKIP SQSKYLYLKN DSDINECTPL WRNGPSDKPV LCNACGSRWX  60
TKGTLVNYTP LHARAEPDDY EDHRVSRVKS ISVNKNKEIK LVKRKQNPES VVAGGVNSDY  120
SHXFRKLTEE DTSNRSSSGS AVSNSESCAQ FGSGDASDLT GPAQSMVWDS MVPSRKRTCI  180
GRPKPSPVEK LTKDLYTILH EQQSSYFSGS SEEDLLFESE TPMVSVEIGH GSVLIRHPNS  240
IAREEESEAS SISVDNKQCH ANEAYSHSAT LFVHNNNKGV NMASTVSGRM NNLSGQGMQH  300
EPMKREKSQL DNLQILGNHN SPLCHVDLND ILNFEEFTRQ LTNEEQQQLL KHLPPVDDVK  360
FPYSLKNMFD SPQFRENLTS FQQLLAEGVF DISFLGTKTE DCKTLKRLAL SNSSKSKWVE  420
RYHLLKKYKT SHGKSIVSAP NMASSNFRHV KRLRDNETQS LPDVKMMKSP KRIIMKGSYE  480
NKDPMDYDGG SCFSPKSLFA LPPDGSSFLM DSMNFVDESS DQDLLLDVPS NGSFAQAELL  540
HPAMSFGAPQ ASNSSSSIYP HSDAVLVALI EQEKKKGRRK QVTLRGACER SGHLACFYAF  600
FADATIV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136960.0bud| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368347.20.0GATA transcription factor 26-like
SwissprotQ8W4H11e-145GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A498K6C60.0A0A498K6C6_MALDO; Uncharacterized protein
STRINGXP_008368347.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-145GATA transcription factor 26