PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP03020_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 698aa MW: 78115.2 Da PI: 9.3862

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP03020_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.6	1.2e-31	117	201	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW+k ev+aLi++r+ +e+r+r+ lk+plWeevs ++ g++r++k+Ckekwen+nk+++k+ke+ +kr +++s+tcp GSMUA_AchrUn_randomP03020_001 117 RWPKAEVQALIRVRSGLESRFREPGLKGPLWEEVSGTLATMGYHRTAKRCKEKWENINKYFRKTKESGRKR-PQHSKTCP 195 8******************************************************************98.9*** PP trihelix 81 yfdqle 86 yf+ql+ GSMUA_AchrUn_randomP03020_001 196 YFQQLD 201 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.004	110	174	IPR017877	Myb-like domain
Pfam	PF13837	1.4E-22	116	203	No hit	No description
CDD	cd12203	5.56E-28	116	181	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MDHQEGLHMK FLEVMERREQ ERTSREEAWR KQEAAKSSRE AAARAQERAL ASSREAAIIS 60 FLEKITGVSL NLPSKLQSPD VDDDKEENVN NIGNLQIETF NNNGNPDSNK VMFNTSRWPK 120 AEVQALIRVR SGLESRFREP GLKGPLWEEV SGTLATMGYH RTAKRCKEKW ENINKYFRKT 180 KESGRKRPQH SKTCPYFQQL DQLYSKSLTN KPHPSSASPT TNVATVHASG ASNDQGKDNS 240 ELLDAIVVPA DHQSFKFSDM GGLSSSIIIA TAIAASEERR RLLKEVTRHL QYKELSHLLH 300 LVQFIDKDVE RGVVGGSRHH HSSLQRAIIY GVYMVISNHF RAAGLDPLFL PIFAGLATAF 360 VFHPFGLHLR EKWSAKLSAI LIAQFVLHGF GGLVLFSKSI YMMLGMKKTS PAIASAMSNL 420 APGLIFIVAV CLRLEKFEVE YWYSRAKVGE TFVCFSGSVA MSCFRSNSNS PNLKSKEPKL 480 LMKHLDKDTY SDWILGCFYL LAAVVLQLQV ISFQIKLLLL ETSSSSCVIT SVLASALTAL 540 MQVLTQGKIH VGDTAIYTWF LVMIGSIASR LVFCFSSLQM WCLNRKGPPL VAIFSPIQTL 600 CAASYSFSHP LRADHKGLLC GQILMFAGLC IVLWAKSHES CSVFDVNDGS RQPVDDVETP 660 LVWSRDAHEW LCSGNMVKCT NNIAAIKRRR QFQFLLAL

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MDHQEGLHMK FLEVMERREQ ERTSREEAWR KQEAAKSSRE AAARAQERAL ASSREAAIIS  60
FLEKITGVSL NLPSKLQSPD VDDDKEENVN NIGNLQIETF NNNGNPDSNK VMFNTSRWPK  120
AEVQALIRVR SGLESRFREP GLKGPLWEEV SGTLATMGYH RTAKRCKEKW ENINKYFRKT  180
KESGRKRPQH SKTCPYFQQL DQLYSKSLTN KPHPSSASPT TNVATVHASG ASNDQGKDNS  240
ELLDAIVVPA DHQSFKFSDM GGLSSSIIIA TAIAASEERR RLLKEVTRHL QYKELSHLLH  300
LVQFIDKDVE RGVVGGSRHH HSSLQRAIIY GVYMVISNHF RAAGLDPLFL PIFAGLATAF  360
VFHPFGLHLR EKWSAKLSAI LIAQFVLHGF GGLVLFSKSI YMMLGMKKTS PAIASAMSNL  420
APGLIFIVAV CLRLEKFEVE YWYSRAKVGE TFVCFSGSVA MSCFRSNSNS PNLKSKEPKL  480
LMKHLDKDTY SDWILGCFYL LAAVVLQLQV ISFQIKLLLL ETSSSSCVIT SVLASALTAL  540
MQVLTQGKIH VGDTAIYTWF LVMIGSIASR LVFCFSSLQM WCLNRKGPPL VAIFSPIQTL  600
CAASYSFSHP LRADHKGLLC GQILMFAGLC IVLWAKSHES CSVFDVNDGS RQPVDDVETP  660
LVWSRDAHEW LCSGNMVKCT NNIAAIKRRR QFQFLLAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0U5W4	0.0	M0U5W4_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP03020_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-40	Trihelix family protein