PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 484aa    MW: 53480.9 Da    PI: 6.0568
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix103.71.4e-32259343186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW+k ev+aLi++r+ +e+r+++  lk+plWeevs+ m   g++rs+k+Ckekwen+nk+++k+ke+ kkr + + +tcpyf+ql+
  GSMUA_Achr7P04610_001 259 RWPKAEVQALIRVRSGLESRFQEPGLKGPLWEEVSATMTTMGYHRSAKRCKEKWENINKYFRKTKESGKKR-PHHAKTCPYFQQLD 343
                            8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122038.05E-29258323No hitNo description
PfamPF138378.7E-24258345No hitNo description
PROSITE profilePS500906.876258316IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVCLNYAGFK VNEWPSFLAP AMGFKLAMEE SSGGGSRDGI NDGDAILHGD DGSESRLHHW  60
QRDDESAIKE LSWRPLDIDY INRNNKRCTD KKPECSSGHY SKKSKEVAEC DHVQAAGGSN  120
YKLFSELEAI YKPGGGSNAG GGANQTGSGS ALTGDETPLL HVMVPPGLPA ADRVGGTSET  180
SAGEEAPTKK SSKDGARRRR KRRQRQLSSV AAFFESLVKQ LMDHQEGLHR KFLEAAARAQ  240
ERALASSREA AIVSFNTSRW PKAEVQALIR VRSGLESRFQ EPGLKGPLWE EVSATMTTMG  300
YHRSAKRCKE KWENINKYFR KTKESGKKRP HHAKTCPYFQ QLDQLYSKSL NTNKPHPSAS  360
PPGANAAASN PPGDIKDQPK VNSELLDAIV VPADHQSFRF SDMGPLSFDF NSKGNENKQE  420
PGVSVENNDD EDEDVDQGGG EEEEEGEGES QGEEESLGRR RHQLDQEEEE DLRDSSLFFR  480
RLQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203ARRRRKRRQ
2196202RRRRKRR
3196203RRRRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408117.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLM0TEQ10.0M0TEQ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-39Trihelix family protein