PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P24120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 669aa    MW: 73588.9 Da    PI: 6.2152
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P24120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix105.34.3e-33467551186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW+k ev+aLi++r+ +e+r+++  lk+plWeevs+ m+  g++rs+k+Ckekwen+nk+++k+ke+ kkr +++s+tcpyf+ql+
  GSMUA_Achr1P24120_001 467 RWPKAEVQALIRVRSGLESRFQEPGLKGPLWEEVSATMATMGYHRSAKRCKEKWENINKYFRKTKERGKKR-PQHSKTCPYFQQLD 551
                            8********************************************************************98.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166460524IPR017877Myb-like domain
CDDcd122032.69E-30466531No hitNo description
PfamPF138373.3E-24466553No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MQSGYGGVSE IQKFMVDSCG SSLFSISSAN PTTVGAGAVD TPTTDIHSAA LHPLKYHPLP  60
QPHQPQPQAS PPLPPHFSHF HSVSITQQLF HHPAHQFQLF HPQQQYLEPR QLIPQHQLGL  120
DHEPAPENSS SPTRIIPGSS SGGGPSFLTA AMSFKLSVND SSGGGGGGGN REGINDNDSI  180
LQGDDGSESR LHHWQREDES SIKELSWRPL DLDYINRNHK RCKDKEAETS NSKHCRKNKE  240
GDETEDVQVA GGSNYKIFSE LEAIYNKPGG GANQTGSGSA LTGDEAPLLH ATTVAAPGPP  300
AADEEEEATA KKLSKGSGRR RRKWRQRQLS SVAAFFEDLV KQLMDHQEDL HRQFLDVMER  360
REQQRISREE AWRKQQVAKS SREAATRAQE RALASSREAA IISFIEKFTG ESLNLPCNLP  420
FPSHMPDADA DKEDHTNTPN NLQIEPSSDT FNNGDPGSSK MSFNTSRWPK AEVQALIRVR  480
SGLESRFQEP GLKGPLWEEV SATMATMGYH RSAKRCKEKW ENINKYFRKT KERGKKRPQH  540
SKTCPYFQQL DQLYSKSLNT NPITSTSSPN ATNVSTIAAA SGANEGQRKD NSELLDAIVV  600
PADHQSFRFS DMAALGFDFN SRGDDSDRAG GGGGGTAAEG PLEPRVSEDN NDEEDDDQGG  660
EFPPTFYLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317325GRRRRKWRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415425.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLM0S2L90.0M0S2L9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P24120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-52Trihelix family protein