PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035582
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 486aa    MW: 54813.8 Da    PI: 6.5112
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035582genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.82.9e-23115222186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+ +v++Li a+ ++++++++++                     +kk++W++vs++m e+g+ +sp+qC++k+++lnkryk+++++ +++ +++++
  Lus10035582 115 KWTDGMVRLLIMAVYYIGDEVGTEAsdpvvsnsgsgkkkqsgaglsQKKGKWKSVSRAMLEKGYYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVV 212
                  7**************9999999875567777888888889999999**********************************************559*** PP

     trihelix  77 stcpyfdqle 86 
                  ++ +++d ++
  Lus10035582 213 ENQALLDTMD 222
                  ***9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-21113247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEQNGLFSGG GITSSSAAML GLDIPLHQQQ IPQNNPPLQQ QQHNFHHHNP PMAAPAAAAA  60
AYAPPQLQPA VKVQNQYPPF ASSSHPKSPL SDDDDCVGDD GGDPKKKMSP WQRMKWTDGM  120
VRLLIMAVYY IGDEVGTEAS DPVVSNSGSG KKKQSGAGLS QKKGKWKSVS RAMLEKGYYV  180
SPQQCEDKFN DLNKRYKRVN DILGRGTACK VVENQALLDT MDLSPKMKEE VRKLLSSKHL  240
FFREMCAYHN SCGHGPTSGD ATHQQHQHHP QQGSSQVLQQ QKCSHSENSG HMVANSMAGK  300
RVTNDEDDDD DEDESHDDEY DDDEDYEDGA EGHSRGQNSN ASHGHEEDGH DTHKRPRRTA  360
TDMMMSSTMQ EFDGELMGVV QDGAKSPWEK KQWMRMRLIQ LEEQQVSYQA KSLEIEKQRM  420
KWVKFAGKKE REMERAKLEN ERKRIENERM MLFVRQKELD LQHQQQQQQQ QLCSNRRSDP  480
SSLTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619818.11e-180nucleolar transcription factor 1-B-like
TrEMBLA0A2C9VCP21e-178A0A2C9VCP2_MANES; Uncharacterized protein
STRINGLus100355820.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-65sequence-specific DNA binding transcription factors