PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028178
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 275aa    MW: 29582.4 Da    PI: 9.5352
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028178genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17177211135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10028178 177 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 211
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-17171221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-14175209IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-14175234No hitNo description
PROSITE profilePS5011411.451175207IPR000679Zinc finger, GATA-type
CDDcd002022.97E-14176223No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15177211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAPSILLLIL LLPTPSTSQS TISSISPTTI SSPPPPPLPP PPPPPLISPP FLPSXXXXPS  60
LPPHHHHHSS SFHPAAPDFS PDYFAHQLSL PNDDVAELEW LSQFVDDSFA DFPPNSLAAI  120
NVVQSTAASS ASRGRAARSK RSRLPAVDGG GGAAWKVEGG VRSRASSPTP EGGVRRCTHC  180
ASEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVVELRR  240
QKEMMVMRQQ SGAVGRASTM YNNNQAEEQD FNVY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083638.12e-75GATA transcription factor 4
SwissprotO497412e-64GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A067K9623e-74A0A067K962_JATCU; GATA transcription factor
STRINGLus100281780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-59GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]