PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024808
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 267aa    MW: 29854.1 Da    PI: 8.6571
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024808genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.3e-21106165357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Lus10024808 106 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITCQLgrygKIEGKNVFYWFQNHKARERQ 165
                  7*****************99**************************************97 PP
2Wus_type_Homeobox115.91.9e-37106166464
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqk
        Lus10024808 106 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITCQLGRYGKIEGKNVFYWFQNHKARERQK 166
                        8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-12102171IPR009057Homeodomain-like
SMARTSM003892.9E-6103170IPR001356Homeobox domain
PfamPF000461.6E-18106165IPR001356Homeobox domain
CDDcd000861.07E-4106166No hitNo description
Gene3DG3DSA:1.10.10.602.9E-7107165IPR009057Homeodomain-like
PROSITE profilePS500719.701111166IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGVVSMKVHH NNSTAAAATT TAGLFWEHHH HHHPDLSLGI NNKRYRPLAP KLESSPNSSS  60
SNTNTPPRPS FDLKSFIRDD KHSPPPPPPR PAAAHQDHTT VHPGGTRWNP TQEQIGILEM  120
LYRGGMRTPN AQQIEQITCQ LGRYGKIEGK NVFYWFQNHK ARERQKLKRN SSRTPFSLDI  180
IPVGDQAEEI VTSPSKRNCR SWGIQHQLHC KQQQEEVSGG RSCSSNSSGG QEQDHDDEEQ  240
GIRDRTLELF PLHPDGTLSL SPLITN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884316.12e-66WUSCHEL-related homeobox 4
RefseqXP_021689235.12e-66WUSCHEL-related homeobox 4
SwissprotQ6X7J98e-61WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLC0IN091e-65C0IN09_PETHY; WOX4
STRINGLus100248080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.17e-59WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]