PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023049

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 794aa MW: 88016.9 Da PI: 6.4293

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023049	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	569	617	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +isle+l+++Fs+++kdA+k+Lgvc+T++KriCR++GI+RWP+Rki+++ Lus10023049 569 SISLEVLQRHFSGSLKDASKSLGVCPTTMKRICRHHGISRWPSRKINKV 617 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.415	556	637	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-25	570	617	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-18	682	769	No hit	No description
PROSITE profile	PS51745	17.252	689	769	IPR000270	PB1 domain
SMART	SM00666	9.1E-17	689	769	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.5E-22	689	768	No hit	No description
Pfam	PF00564	3.3E-12	690	766	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MTELRRTLLI TSPVTSGADS QEPLMMELDF DLYSSSWPLD QFSIPPSHPT SPLFLSNSDY 60 SQPCSPLWSF SAAADDDDDD NSPPSVAAAV RDYPLFITCN LKSMPFPIDS SDGHCSIKER 120 MTRALRYLKQ STDQQNILAQ IWAPVKKIGG SRFVLTTSEQ PFVLDPHCNG LNQYRMVSLL 180 YTFSVDDDEE TDGVAGDYQL GLPGRVFHRK LPEWTPNVQY YSSKEYSRLD HALHYNVRGS 240 LALPVFQTDS GRESSPCVGV IELVMTSQVV NYGPEVDKVC KALQAVNLKS SEVLDHGKPQ 300 ICNEGRQNAL AEIQEILTLL CETHGLPLAQ AWVPCMHRCV LANGGGVKKT CTSFDGNCNG 360 KVCMSTTDRA FYVADSQVWG FRQACIEHHL QTGQGVSGRA FSSRGACFCR DITNFCKTQY 420 PLVHYARMFG LKGSFAICLK SSHTGDDVYV LEFFLNIVEG FEQNTRVLGS LLDTMQQHFQ 480 SLAVALSGIQ EEEGGLSVEI VEASEGGKLD FIVEHVRVVP CSLDSLPKEV GIVQPTVELD 540 TTVDNQSNCS NEPKNLRPSK KKRGKTEISI SLEVLQRHFS GSLKDASKSL GVCPTTMKRI 600 CRHHGISRWP SRKINKVNRS LTKLQKVIES VRVVPPDSSF HLAQDLTKSG NSTSHGSCEG 660 CPAATNESDP SKDRPLSSAS PIRDHKDKSV IIKATYKQDM IRFRIGTRCG MMELKEEVGK 720 RLKLEVGLFE VKYFDDDNEW VKIVCDADLQ ECIDITSSYN IVRMSIHEVA AKFGSSCESR 780 VGRVCYDDKL AIV*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MTELRRTLLI TSPVTSGADS QEPLMMELDF DLYSSSWPLD QFSIPPSHPT SPLFLSNSDY  60
SQPCSPLWSF SAAADDDDDD NSPPSVAAAV RDYPLFITCN LKSMPFPIDS SDGHCSIKER  120
MTRALRYLKQ STDQQNILAQ IWAPVKKIGG SRFVLTTSEQ PFVLDPHCNG LNQYRMVSLL  180
YTFSVDDDEE TDGVAGDYQL GLPGRVFHRK LPEWTPNVQY YSSKEYSRLD HALHYNVRGS  240
LALPVFQTDS GRESSPCVGV IELVMTSQVV NYGPEVDKVC KALQAVNLKS SEVLDHGKPQ  300
ICNEGRQNAL AEIQEILTLL CETHGLPLAQ AWVPCMHRCV LANGGGVKKT CTSFDGNCNG  360
KVCMSTTDRA FYVADSQVWG FRQACIEHHL QTGQGVSGRA FSSRGACFCR DITNFCKTQY  420
PLVHYARMFG LKGSFAICLK SSHTGDDVYV LEFFLNIVEG FEQNTRVLGS LLDTMQQHFQ  480
SLAVALSGIQ EEEGGLSVEI VEASEGGKLD FIVEHVRVVP CSLDSLPKEV GIVQPTVELD  540
TTVDNQSNCS NEPKNLRPSK KKRGKTEISI SLEVLQRHFS GSLKDASKSL GVCPTTMKRI  600
CRHHGISRWP SRKINKVNRS LTKLQKVIES VRVVPPDSSF HLAQDLTKSG NSTSHGSCEG  660
CPAATNESDP SKDRPLSSAS PIRDHKDKSV IIKATYKQDM IRFRIGTRCG MMELKEEVGK  720
RLKLEVGLFE VKYFDDDNEW VKIVCDADLQ ECIDITSSYN IVRMSIHEVA AKFGSSCESR  780
VGRVCYDDKL AIV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023049

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A444XW72	0.0	A0A444XW72_ARAHY; Uncharacterized protein
STRING	Lus10023049	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Lus10023049

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]