PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018726

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WOX

Protein Properties

Length: 153aa MW: 17564.6 Da PI: 9.5171

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018726	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.4	1.2e-13	3	46	19	57
HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Lus10018726 3 YRGgMRTPNAQQIEQITCQLgrygKIEGKNVFYWFQNHKARERQ 46 565589************************************97 PP
2	Wus_type_Homeobox	85.3	6.8e-28	2	47	19	64
Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqk Lus10018726 2 LYRGGMRTPNAQQIEQITCQLGRYGKIEGKNVFYWFQNHKARERQK 47 9********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	2.4E-11	3	46	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.02E-7	8	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-4	9	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MLYRGGMRTP NAQQIEQITC QLGRYGKIEG KNVFYWFQNH KARERQKLKR NSSRTPFTLD 60 IIPVGDQLEE TIRSPSKRKC RSWGIQHQLH YKQQQQQQEE VSEGRSSSSN SSRGGQDHDQ 120 DEEQGIRDGT LELFPLHPDG TLSLSPLTKL IL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018726

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510184.1	2e-39	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-33	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	B9R791	4e-38	B9R791_RICCO; Transcription factor, putative
STRING	Lus10018726	1e-109	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-33	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Lus10018726

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]