PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011010
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 623aa    MW: 69280.2 Da    PI: 6.8406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Lus10011010  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-11549No hitNo description
CDDcd002021.37E-16655No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003208.4E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.3E-7381467IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RPDPVDYEHH  60
RVSRLKNISV NRNEEIKFVK RKAIVDAEVA LAEDVSNRSS SGSAISNSES CVQLGSSIDA  120
SSGQTVVWDS TVPSRKRTCV NRPKHSSVEK LTKDLYTIWH EQQSSCFSGS SEEDDLLFES  180
ETPMVSVEIG HGSVLIRHPS TIARDEESEA SSLSVNEAYS RSVNRPGQGM QHHQQLIRDE  240
KVQILGSRKS PLCSIDLNVS FHDGSGQTVV WDSTVPSRKR TCVNRPKHSS VEKLTKDLYT  300
IWHEQQSSCF SGSSEEDDLL FESETPMVSV EIGHGSVLIR HPSTIARDEE SEASSLSVNE  360
AYSRSVNRPG QGMQHHQQLI RDEKVQILGS RKSPLCSIDL NCIVNFEEFA KQLTDEEQQQ  420
LTKYLPTLDT SSIRAMFDSS QFKENLCSYQ QLLAEGVFDL SFTEGKAEDC KTLKRLTLSD  480
FSKSKWVEHY NLLKVRTDTS TSAGKGKHAA SNFWINAKRP SSESSSQRIP EMKMMRSPKR  540
SVIYVNNELT DNEASYFSPK SLFALPPEGS GSLNFVNEGD LLVDVPSNGS FPQAELLHQH  600
PALRKLGQQA STSSSSIHPF HS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047566.11e-146PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H14e-91GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA91e-144A9PFA9_POPTR; Uncharacterized protein
STRINGLus100110100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.14e-80GATA transcription factor 26